Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADGRF4_chr6_47693580_47727014	0/0	c0004	2088	6	0	1	5	0	0	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	c0005	2088	3	0	0	3	0	0	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	c0006	2088	2	0	0	2	0	0	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	c0007	2088	2	1	1	0	0	0	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	c0008	2088	2	1	1	0	0	0	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	c0009	2088	1	0	0	0	0	1	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	c0010	2088	1	1	0	0	0	0	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	c0011	2088	1	0	0	1	0	0	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	c0012	2088	1	0	0	1	0	0	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	c0013	2088	1	0	0	0	0	1	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	c0014	2088	1	0	0	0	0	1	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	c0015	2088	1	1	0	0	0	0	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	c0016	2088	1	0	0	0	0	1	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF5_chr6_46847522_46926938	0/0	c0001	4041	133	11	39	63	7	13	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	c0002	4041	114	19	13	64	4	14	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	c0003	4041	44	36	5	1	0	2	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	c0004	4041	28	1	2	14	2	9	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	c0005	4041	10	2	1	7	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	c0006	4041	7	6	1	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	1/0	c0007	4041	6	1	3	0	1	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	c0008	4041	5	5	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	c0009	4041	3	2	1	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	c0010	4041	2	2	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	c0011	4041	2	2	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	c0012	4041	2	0	0	2	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	c0013	4041	2	0	0	2	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	c0014	4041	2	0	0	2	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/1	c0015	4041	2	0	0	0	0	1	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	c0016	4041	1	0	0	0	0	1	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	c0017	4041	1	0	0	1	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	c0018	4041	1	0	0	1	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	c0019	4041	1	0	0	1	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	c0020	4041	1	0	0	1	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	c0021	4041	1	0	0	0	0	1	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	c0022	4041	1	0	1	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	c0023	4041	1	0	0	0	0	1	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	c0024	4041	1	1	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	c0025	4041	1	1	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	c0026	4041	1	1	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	c0027	4041	1	0	0	1	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	c0028	4041	1	1	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	c0029	4041	1	1	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	c0030	4041	1	0	1	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	c0031	4041	1	1	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	c0032	4041	1	1	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	c0033	4041	1	1	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	c0034	4041	1	1	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	c0035	4041	1	0	1	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRG1_chr16_57623630_57670567	0/0	c0001	2064	269	67	36	137	5	24	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	1/1	c0002	2064	56	0	20	19	3	12	copy fasta	ADGRG1	chr16	57623630	57670567