JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ELK3_chr12_96189375_96274824	0/0	c0009	1224	1	1	0	0	0	0	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	c0010	1224	1	0	0	0	0	1	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	c0011	1224	1	0	0	1	0	0	copy fasta	ELK3	chr12	96189375	96274824
ELK4_chr1_205602943_205637011	1/1	c0001	1296	335	75	65	147	13	33	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	c0002	1296	84	15	11	47	1	10	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	c0003	1296	3	0	0	0	0	3	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	c0004	1296	2	2	0	0	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELL2_chr5_95880098_95966851	1/1	c0001	1923	152	23	35	72	3	17	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	c0002	1923	109	28	16	50	4	11	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	c0003	1923	29	12	4	11	0	2	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	c0004	1923	5	5	0	0	0	0	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	c0005	1923	4	4	0	0	0	0	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	c0006	1923	4	0	0	4	0	0	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	c0007	1923	3	1	1	0	1	0	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	c0008	1923	2	1	1	0	0	0	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	c0009	1923	2	0	0	2	0	0	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	c0010	1923	1	0	1	0	0	0	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	c0011	1923	1	1	0	0	0	0	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	c0012	1923	1	1	0	0	0	0	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	c0013	1923	1	0	0	1	0	0	copy fasta	ELL2	chr5	95880098	95966851
ELL3_chr15_43767620_43781966	1/1	c0001	1194	262	56	43	118	11	32	copy fasta	ELL3	chr15	43767620	43781966
ELL3_chr15_43767620_43781966	0/0	c0002	1194	99	25	12	55	1	6	copy fasta	ELL3	chr15	43767620	43781966
ELL3_chr15_43767620_43781966	0/0	c0003	1194	5	5	0	0	0	0	copy fasta	ELL3	chr15	43767620	43781966
ELL3_chr15_43767620_43781966	0/0	c0004	1194	1	1	0	0	0	0	copy fasta	ELL3	chr15	43767620	43781966
ELL3_chr15_43767620_43781966	0/0	c0005	1194	1	0	1	0	0	0	copy fasta	ELL3	chr15	43767620	43781966
ELL3_chr15_43767620_43781966	0/0	c0006	1194	1	0	0	1	0	0	copy fasta	ELL3	chr15	43767620	43781966
ELL3_chr15_43767620_43781966	0/0	c0007	1194	1	0	0	1	0	0	copy fasta	ELL3	chr15	43767620	43781966
ELL3_chr15_43767620_43781966	0/0	c0008	1194	1	0	0	1	0	0	copy fasta	ELL3	chr15	43767620	43781966
ELL3_chr15_43767620_43781966	0/0	c0009	1194	1	1	0	0	0	0	copy fasta	ELL3	chr15	43767620	43781966
ELL_chr19_18437663_18527070	1/1	c0001	1866	181	55	60	38	8	18	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	c0002	1866	43	22	6	5	2	8	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	c0003	1866	3	3	0	0	0	0	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	c0004	1866	3	3	0	0	0	0	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	c0005	1866	3	3	0	0	0	0	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	c0006	1866	2	0	1	0	0	1	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	c0007	1866	2	2	0	0	0	0	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	c0008	1866	1	0	1	0	0	0	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	c0009	1866	1	0	0	1	0	0	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	c0010	1866	1	1	0	0	0	0	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	c0011	1866	1	1	0	0	0	0	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	c0012	1866	1	1	0	0	0	0	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	c0013	1866	1	0	0	0	0	1	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	c0014	1866	1	1	0	0	0	0	copy fasta	ELL	chr19	18437663	18527070
ELMO1_chr7_36847906_37453864	1/0	c0001	2184	48	28	9	7	0	3	copy fasta	ELMO1	chr7	36847906	37453864
ELMO1_chr7_36847906_37453864	0/0	c0002	2184	29	14	9	3	0	3	copy fasta	ELMO1	chr7	36847906	37453864
ELMO1_chr7_36847906_37453864	0/0	c0003	2184	8	3	5	0	0	0	copy fasta	ELMO1	chr7	36847906	37453864
ELMO1_chr7_36847906_37453864	0/0	c0004	2184	2	2	0	0	0	0	copy fasta	ELMO1	chr7	36847906	37453864
ELMO1_chr7_36847906_37453864	0/1	c0005	2184	2	0	1	0	0	0	copy fasta	ELMO1	chr7	36847906	37453864
ELMO1_chr7_36847906_37453864	0/0	c0006	2184	1	0	1	0	0	0	copy fasta	ELMO1	chr7	36847906	37453864
ELMO1_chr7_36847906_37453864	0/0	c0007	2184	1	1	0	0	0	0	copy fasta	ELMO1	chr7	36847906	37453864