JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ELMO1_chr7_36847906_37453864	0/0	c0008	2184	1	0	1	0	0	0	copy fasta	ELMO1	chr7	36847906	37453864
ELMO2_chr20_46361050_46411615	0/1	c0001	2163	302	81	46	132	10	32	copy fasta	ELMO2	chr20	46361050	46411615
ELMO2_chr20_46361050_46411615	1/0	c0002	2163	5	3	1	0	0	0	copy fasta	ELMO2	chr20	46361050	46411615
ELMO2_chr20_46361050_46411615	0/0	c0003	2163	2	0	0	2	0	0	copy fasta	ELMO2	chr20	46361050	46411615
ELMO2_chr20_46361050_46411615	0/0	c0004	2163	1	0	1	0	0	0	copy fasta	ELMO2	chr20	46361050	46411615
ELMO2_chr20_46361050_46411615	0/0	c0005	2163	1	1	0	0	0	0	copy fasta	ELMO2	chr20	46361050	46411615
ELMO2_chr20_46361050_46411615	0/0	c0006	2163	1	1	0	0	0	0	copy fasta	ELMO2	chr20	46361050	46411615
ELMO3_chr16_67194131_67209004	0/0	c0001	2163	113	42	21	34	5	11	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	1/1	c0002	2163	110	3	25	59	5	16	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	c0003	2163	50	37	3	6	0	4	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	c0004	2163	16	0	0	16	0	0	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	c0005	2163	7	3	1	0	1	2	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	c0006	2163	7	1	6	0	0	0	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	c0007	2163	4	0	0	0	0	4	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	c0008	2163	3	3	0	0	0	0	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	c0009	2163	2	0	1	1	0	0	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	c0010	2163	2	0	0	2	0	0	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	c0011	2163	2	1	1	0	0	0	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	c0012	2163	2	2	0	0	0	0	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	c0013	2163	1	0	0	1	0	0	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	c0014	2163	1	0	0	1	0	0	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	c0015	2163	1	0	0	1	0	0	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	c0016	2163	1	0	0	0	1	0	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	c0017	2163	1	0	0	0	0	1	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	c0018	2163	1	0	0	1	0	0	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	c0019	2163	1	1	0	0	0	0	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	c0020	2163	1	0	0	1	0	0	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	c0021	2163	1	1	0	0	0	0	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	c0022	2163	1	0	0	1	0	0	copy fasta	ELMO3	chr16	67194131	67209004
ELMOD1_chr11_107586147_107671779	1/1	c0001	1005	204	28	52	87	12	23	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	c0002	1005	133	64	8	53	0	8	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	c0003	1005	2	0	0	2	0	0	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	c0004	1005	1	0	0	0	0	1	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	c0005	1005	1	1	0	0	0	0	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	c0006	1005	1	1	0	0	0	0	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD2_chr4_140519168_140558770	1/1	c0001	882	363	86	62	172	6	35	copy fasta	ELMOD2	chr4	140519168	140558770
ELMOD2_chr4_140519168_140558770	0/0	c0002	882	5	0	0	5	0	0	copy fasta	ELMOD2	chr4	140519168	140558770
ELMOD2_chr4_140519168_140558770	0/0	c0003	882	1	0	0	0	0	1	copy fasta	ELMOD2	chr4	140519168	140558770
ELMOD2_chr4_140519168_140558770	0/0	c0004	882	1	0	0	1	0	0	copy fasta	ELMOD2	chr4	140519168	140558770
ELMOD3_chr2_85349769_85396748	1/1	c0001	1146	298	58	63	126	12	37	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	c0002	1146	22	0	3	19	0	0	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	c0003	1146	21	15	5	0	1	0	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	c0004	1146	17	5	5	4	1	2	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	c0005	1146	12	4	1	1	3	3	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	c0006	1146	4	1	1	0	1	1	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	c0007	1146	3	3	0	0	0	0	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	c0008	1146	2	0	0	2	0	0	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	c0009	1146	1	1	0	0	0	0	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	c0010	1146	1	1	0	0	0	0	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	c0011	1146	1	1	0	0	0	0	copy fasta	ELMOD3	chr2	85349769	85396748