JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ELMOD3_chr2_85349769_85396748	0/0	c0012	1146	1	0	0	0	0	1	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	c0013	1146	1	0	0	1	0	0	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	c0014	1146	1	0	0	1	0	0	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	c0015	1146	1	1	0	0	0	0	copy fasta	ELMOD3	chr2	85349769	85396748
ELN_chr7_74023173_74074907	0/0	c0001	2175	276	63	44	137	5	27	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	c0002	2175	52	6	15	17	8	6	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	c0003	2175	7	0	0	7	0	0	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	c0004	2175	6	1	2	0	1	2	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	c0005	2175	3	3	0	0	0	0	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	c0006	2175	2	0	0	2	0	0	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	c0007	2175	2	0	2	0	0	0	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	c0008	2175	2	2	0	0	0	0	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	c0009	2175	2	1	1	0	0	0	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	c0010	2175	1	0	0	1	0	0	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	c0011	2175	1	0	0	1	0	0	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	c0012	2175	1	0	0	1	0	0	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	c0013	2187	1	0	0	1	0	0	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	c0014	2160	1	0	0	1	0	0	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	c0015	2175	1	0	0	0	0	1	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	c0016	2175	1	0	0	1	0	0	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	c0017	2175	1	0	0	1	0	0	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	c0018	2175	1	0	0	0	0	1	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	c0019	2175	1	1	0	0	0	0	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	c0020	2175	1	0	0	0	0	1	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	c0021	2175	1	1	0	0	0	0	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	c0022	2175	1	1	0	0	0	0	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	c0023	2175	1	1	0	0	0	0	copy fasta	ELN	chr7	74023173	74074907
ELOA2_chr18_47027527_47040621	0/0	c0001	2262	244	35	49	127	5	28	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	1/1	c0002	2262	142	35	28	57	8	12	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	c0003	2262	7	0	0	7	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	c0004	2262	6	2	2	0	2	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	c0005	2262	6	6	0	0	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	c0006	2258	6	0	0	6	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	c0007	2262	6	6	0	0	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	c0008	2262	5	0	2	0	1	2	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	c0009	2262	4	0	0	4	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	c0010	2262	3	0	1	0	1	1	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	c0011	2262	3	3	0	0	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	c0012	2262	3	3	0	0	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	c0013	2262	2	2	0	0	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	c0014	2262	1	1	0	0	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	c0015	2262	1	0	0	1	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	c0016	2262	1	0	0	0	0	1	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	c0017	2262	1	0	0	1	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	c0018	2262	1	0	0	1	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	c0019	2262	1	0	0	0	1	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	c0020	2262	1	1	0	0	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	c0021	2262	1	0	1	0	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	c0022	2262	1	0	0	1	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	c0023	2262	1	0	1	0	0	0	copy fasta	ELOA2	chr18	47027527	47040621