JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ELOA2_chr18_47027527_47040621	0/0	c0024	2262	1	0	0	1	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA_chr1_23738471_23767059	1/1	c0001	2319	236	55	43	100	8	28	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	c0002	2319	87	6	17	49	8	7	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	c0003	2319	26	1	7	12	2	4	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	c0004	2319	14	11	3	0	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	c0005	2319	11	9	2	0	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	c0006	2319	5	3	2	0	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	c0007	2319	5	0	5	0	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	c0008	2319	3	3	0	0	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	c0009	2319	2	2	0	0	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	c0010	2319	2	0	2	0	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	c0011	2319	2	1	1	0	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	c0012	2319	1	1	0	0	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	c0013	2319	1	1	0	0	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	c0014	2319	1	0	0	1	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	c0015	2319	1	1	0	0	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	c0016	2319	1	0	0	0	0	1	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	c0017	2319	1	1	0	0	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	c0018	2319	1	1	0	0	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOB_chr16_2766414_2782280	1/1	c0001	357	438	98	82	194	16	46	copy fasta	ELOB	chr16	2766414	2782280
ELOC_chr8_73940119_73977191	1/1	c0001	339	403	89	68	182	12	50	copy fasta	ELOC	chr8	73940119	73977191
ELOC_chr8_73940119_73977191	0/0	c0002	339	1	1	0	0	0	0	copy fasta	ELOC	chr8	73940119	73977191
ELOF1_chr19_11548046_11564230	1/1	c0001	252	412	92	78	176	18	46	copy fasta	ELOF1	chr19	11548046	11564230
ELOVL1_chr1_43358401_43373011	1/1	c0001	840	382	95	75	160	14	36	copy fasta	ELOVL1	chr1	43358401	43373011
ELOVL1_chr1_43358401_43373011	0/0	c0002	840	1	1	0	0	0	0	copy fasta	ELOVL1	chr1	43358401	43373011
ELOVL1_chr1_43358401_43373011	0/0	c0003	840	1	0	1	0	0	0	copy fasta	ELOVL1	chr1	43358401	43373011
ELOVL2_chr6_10975759_11049305	1/1	c0001	891	270	66	42	128	7	25	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	c0002	891	90	24	19	40	1	6	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	c0003	891	14	0	5	0	4	5	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	c0004	891	2	2	0	0	0	0	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	c0005	891	1	0	0	1	0	0	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	c0006	891	1	1	0	0	0	0	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	c0007	891	1	1	0	0	0	0	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	c0008	891	1	0	0	1	0	0	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL3_chr10_102221299_102234589	1/1	c0001	813	433	98	78	203	12	40	copy fasta	ELOVL3	chr10	102221299	102234589
ELOVL3_chr10_102221299_102234589	0/0	c0002	813	2	0	2	0	0	0	copy fasta	ELOVL3	chr10	102221299	102234589
ELOVL3_chr10_102221299_102234589	0/0	c0003	813	1	0	0	1	0	0	copy fasta	ELOVL3	chr10	102221299	102234589
ELOVL4_chr6_79909814_79952553	1/1	c0001	945	258	78	55	90	10	23	copy fasta	ELOVL4	chr6	79909814	79952553
ELOVL4_chr6_79909814_79952553	0/0	c0002	945	95	18	13	42	2	20	copy fasta	ELOVL4	chr6	79909814	79952553
ELOVL4_chr6_79909814_79952553	0/0	c0003	945	1	0	0	0	0	1	copy fasta	ELOVL4	chr6	79909814	79952553
ELOVL5_chr6_53262404_53353950	1/1	c0001	900	317	76	72	126	15	26	copy fasta	ELOVL5	chr6	53262404	53353950
ELOVL5_chr6_53262404_53353950	0/0	c0002	900	2	0	2	0	0	0	copy fasta	ELOVL5	chr6	53262404	53353950
ELOVL5_chr6_53262404_53353950	0/0	c0003	900	1	0	0	0	1	0	copy fasta	ELOVL5	chr6	53262404	53353950
ELOVL6_chr4_110040846_110203615	1/1	c0001	798	336	88	66	136	16	28	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL6_chr4_110040846_110203615	0/0	c0002	798	2	2	0	0	0	0	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL7_chr5_60746791_60849269	1/1	c0001	846	254	79	46	79	16	32	copy fasta	ELOVL7	chr5	60746791	60849269
ELOVL7_chr5_60746791_60849269	0/0	c0002	846	2	0	0	2	0	0	copy fasta	ELOVL7	chr5	60746791	60849269
ELOVL7_chr5_60746791_60849269	0/0	c0003	846	1	1	0	0	0	0	copy fasta	ELOVL7	chr5	60746791	60849269
ELOVL7_chr5_60746791_60849269	0/0	c0004	846	1	0	0	1	0	0	copy fasta	ELOVL7	chr5	60746791	60849269
ELP1_chr9_108862517_108939124	0/0	c0001	3999	130	2	35	73	8	12	copy fasta	ELP1	chr9	108862517	108939124