JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ELSPBP1_chr19_47989632_48030154	0/0	c0011	672	3	3	0	0	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	c0012	672	3	3	0	0	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	c0013	672	2	0	1	0	0	1	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	c0014	672	2	0	0	1	0	1	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	c0015	672	2	0	0	2	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	c0016	672	2	2	0	0	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	c0017	672	2	1	1	0	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	c0018	672	2	0	0	2	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	c0019	672	1	0	0	1	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	c0020	672	1	1	0	0	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	c0021	672	1	0	0	1	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	c0022	672	1	1	0	0	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154
EMB_chr5_50391192_50446288	1/1	c0001	984	319	79	54	132	14	38	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	c0002	984	18	9	2	7	0	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	c0003	984	2	0	0	2	0	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	c0004	984	2	0	2	0	0	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	c0005	984	1	0	0	1	0	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	c0006	984	1	1	0	0	0	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	c0007	984	1	0	0	1	0	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	c0008	984	1	1	0	0	0	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	c0009	984	1	0	0	1	0	0	copy fasta	EMB	chr5	50391192	50446288
EMC10_chr19_50471507_50495871	0/0	c0001	789	174	30	45	67	7	25	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	1/1	c0002	789	168	55	28	56	7	20	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	c0003	789	3	3	0	0	0	0	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	c0004	789	1	0	1	0	0	0	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	c0005	789	1	0	0	0	0	1	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	c0006	789	1	1	0	0	0	0	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	c0007	789	1	0	0	1	0	0	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	c0008	789	1	0	0	1	0	0	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	c0009	789	1	1	0	0	0	0	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	c0010	789	1	0	0	1	0	0	copy fasta	EMC10	chr19	50471507	50495871
EMC1_chr1_19210660_19256524	0/0	c0001	2982	132	26	26	65	5	10	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	1/0	c0002	2982	97	9	22	43	8	14	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/1	c0003	2982	44	17	6	14	0	6	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	c0004	2982	20	6	12	0	1	1	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	c0005	2982	13	0	0	12	0	1	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	c0006	2982	10	10	0	0	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	c0007	2982	8	7	1	0	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	c0008	2982	5	4	1	0	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	c0009	2982	4	0	1	3	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	c0010	2982	3	0	0	1	0	2	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	c0011	2982	2	2	0	0	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	c0012	2982	1	0	1	0	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	c0013	2982	1	0	0	0	0	1	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	c0014	2982	1	0	0	1	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	c0015	2982	1	1	0	0	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	c0016	2982	1	1	0	0	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	c0017	2982	1	0	0	0	0	1	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	c0018	2982	1	0	0	0	0	1	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	c0019	2982	1	0	0	1	0	0	copy fasta	EMC1	chr1	19210660	19256524