JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EMC1_chr1_19210660_19256524	0/0	c0020	2982	1	1	0	0	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	c0021	2982	1	0	0	0	0	1	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	c0022	2982	1	0	0	1	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	c0023	2982	1	0	0	1	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC2_chr8_108438624_108494196	1/1	c0001	894	359	86	64	143	18	46	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	c0002	894	3	3	0	0	0	0	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	c0003	894	1	1	0	0	0	0	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	c0004	894	1	0	0	1	0	0	copy fasta	EMC2	chr8	108438624	108494196
EMC3_chr3_9957682_9991841	1/1	c0001	786	308	92	61	117	5	31	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	c0002	786	5	0	0	5	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	c0003	786	3	0	2	0	0	1	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	c0004	786	2	0	1	0	1	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	c0005	786	1	0	0	1	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	c0006	786	1	0	0	1	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	c0007	753	1	0	0	1	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	c0008	786	1	0	0	1	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC4_chr15_34220016_34235156	1/1	c0001	552	358	90	74	136	14	42	copy fasta	EMC4	chr15	34220016	34235156
EMC4_chr15_34220016_34235156	0/0	c0002	552	4	4	0	0	0	0	copy fasta	EMC4	chr15	34220016	34235156
EMC6_chr17_3663812_3674665	1/1	c0001	333	412	85	80	182	16	47	copy fasta	EMC6	chr17	3663812	3674665
EMC6_chr17_3663812_3674665	0/0	c0002	333	1	0	0	0	0	1	copy fasta	EMC6	chr17	3663812	3674665
EMC6_chr17_3663812_3674665	0/0	c0003	333	1	1	0	0	0	0	copy fasta	EMC6	chr17	3663812	3674665
EMC7_chr15_34079017_34106862	1/1	c0001	729	401	86	78	180	14	41	copy fasta	EMC7	chr15	34079017	34106862
EMC7_chr15_34079017_34106862	0/0	c0002	729	5	5	0	0	0	0	copy fasta	EMC7	chr15	34079017	34106862
EMC7_chr15_34079017_34106862	0/0	c0003	729	1	0	0	0	0	1	copy fasta	EMC7	chr15	34079017	34106862
EMC7_chr15_34079017_34106862	0/0	c0004	729	1	0	0	1	0	0	copy fasta	EMC7	chr15	34079017	34106862
EMC7_chr15_34079017_34106862	0/0	c0005	729	1	0	0	1	0	0	copy fasta	EMC7	chr15	34079017	34106862
EMC7_chr15_34079017_34106862	0/0	c0006	729	1	1	0	0	0	0	copy fasta	EMC7	chr15	34079017	34106862
EMC8_chr16_85773624_85804544	1/1	c0001	633	397	81	64	188	18	44	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	c0002	633	10	10	0	0	0	0	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	c0003	633	1	1	0	0	0	0	copy fasta	EMC8	chr16	85773624	85804544
EMC9_chr14_24133965_24146591	1/1	c0001	627	418	96	78	183	15	44	copy fasta	EMC9	chr14	24133965	24146591
EMC9_chr14_24133965_24146591	0/0	c0002	627	2	0	0	0	0	2	copy fasta	EMC9	chr14	24133965	24146591
EMC9_chr14_24133965_24146591	0/0	c0003	627	1	0	0	1	0	0	copy fasta	EMC9	chr14	24133965	24146591
EMC9_chr14_24133965_24146591	0/0	c0004	627	1	0	0	0	1	0	copy fasta	EMC9	chr14	24133965	24146591
EMCN_chr4_100390341_100523022	1/1	c0001	786	163	60	40	31	7	23	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	c0002	783	88	17	24	35	0	12	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	c0003	786	4	3	1	0	0	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	c0004	786	2	2	0	0	0	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	c0005	786	2	0	1	0	1	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	c0006	783	1	1	0	0	0	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	c0007	786	1	0	0	0	0	1	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	c0008	786	1	1	0	0	0	0	copy fasta	EMCN	chr4	100390341	100523022
EMD_chrX_154374295_154386523	1/1	c0001	765	283	72	58	112	11	28	copy fasta	EMD	chrX	154374295	154386523
EMD_chrX_154374295_154386523	0/0	c0002	764	1	0	0	1	0	0	copy fasta	EMD	chrX	154374295	154386523
EME1_chr17_50368229_50386483	0/1	c0001	1713	103	24	24	36	5	13	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	1/0	c0002	1713	94	1	1	73	0	18	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	c0003	1716	53	16	20	5	6	6	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	c0004	1716	53	1	22	22	4	4	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	c0005	1713	26	0	7	19	0	0	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	c0006	1716	16	16	0	0	0	0	copy fasta	EME1	chr17	50368229	50386483