JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EME1_chr17_50368229_50386483	0/0	c0007	1716	11	8	3	0	0	0	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	c0008	1716	6	5	1	0	0	0	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	c0009	1716	5	5	0	0	0	0	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	c0010	1716	5	5	0	0	0	0	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	c0011	1713	3	0	0	1	1	1	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	c0012	1716	2	2	0	0	0	0	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	c0013	1716	2	2	0	0	0	0	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	c0014	1716	1	0	0	0	0	1	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	c0015	1713	1	0	0	1	0	0	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	c0016	1713	1	0	0	1	0	0	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	c0017	1713	1	0	0	0	0	1	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	c0018	1716	1	1	0	0	0	0	copy fasta	EME1	chr17	50368229	50386483
EME2_chr16_1767810_1786702	1/1	c0001	1140	286	84	43	128	3	26	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	c0002	1140	102	4	30	39	12	17	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	c0003	1140	17	0	0	15	1	1	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	c0004	1140	5	0	0	5	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	c0005	1140	3	3	0	0	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	c0006	1140	3	0	0	3	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	c0007	1140	2	0	0	2	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	c0008	1140	2	0	0	0	0	2	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	c0009	1140	2	0	0	2	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	c0010	1140	2	2	0	0	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	c0011	1140	1	0	1	0	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	c0012	1140	1	1	0	0	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	c0013	1140	1	0	0	0	0	1	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	c0014	1140	1	0	0	0	0	1	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	c0015	1140	1	1	0	0	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	c0016	1140	1	1	0	0	0	0	copy fasta	EME2	chr16	1767810	1786702
EMG1_chr12_6965913_6984936	1/1	c0001	735	320	88	51	135	10	34	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	c0002	735	6	0	0	4	0	2	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	c0003	735	5	5	0	0	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	c0004	735	2	0	2	0	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	c0005	735	1	1	0	0	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	c0006	735	1	1	0	0	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	c0007	735	1	1	0	0	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	c0008	735	1	0	0	1	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	c0009	735	1	0	1	0	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMID1_chr22_29200896_29264597	1/1	c0001	1332	142	19	28	52	9	32	copy fasta	EMID1	chr22	29200896	29264597
EMID1_chr22_29200896_29264597	0/0	c0002	1332	142	53	13	65	1	10	copy fasta	EMID1	chr22	29200896	29264597
EMID1_chr22_29200896_29264597	0/0	c0003	1332	37	16	2	19	0	0	copy fasta	EMID1	chr22	29200896	29264597
EMID1_chr22_29200896_29264597	0/0	c0004	1332	22	3	7	12	0	0	copy fasta	EMID1	chr22	29200896	29264597
EMID1_chr22_29200896_29264597	0/0	c0005	1332	1	0	0	0	0	1	copy fasta	EMID1	chr22	29200896	29264597
EMID1_chr22_29200896_29264597	0/0	c0006	1332	1	0	0	0	0	1	copy fasta	EMID1	chr22	29200896	29264597
EMID1_chr22_29200896_29264597	0/0	c0007	1332	1	1	0	0	0	0	copy fasta	EMID1	chr22	29200896	29264597
EMID1_chr22_29200896_29264597	0/0	c0008	1332	1	1	0	0	0	0	copy fasta	EMID1	chr22	29200896	29264597
EMID1_chr22_29200896_29264597	0/0	c0009	1332	1	1	0	0	0	0	copy fasta	EMID1	chr22	29200896	29264597
EMILIN1_chr2_27073615_27091403	1/1	c0001	3051	279	68	62	105	16	26	copy fasta	EMILIN1	chr2	27073615	27091403
EMILIN1_chr2_27073615_27091403	0/0	c0002	3051	12	11	1	0	0	0	copy fasta	EMILIN1	chr2	27073615	27091403
EMILIN1_chr2_27073615_27091403	0/0	c0003	3051	5	4	1	0	0	0	copy fasta	EMILIN1	chr2	27073615	27091403
EMILIN1_chr2_27073615_27091403	0/0	c0004	3051	3	0	0	3	0	0	copy fasta	EMILIN1	chr2	27073615	27091403