JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EMILIN1_chr2_27073615_27091403	0/0	c0005	3051	3	3	0	0	0	0	copy fasta	EMILIN1	chr2	27073615	27091403
EMILIN1_chr2_27073615_27091403	0/0	c0006	3051	2	2	0	0	0	0	copy fasta	EMILIN1	chr2	27073615	27091403
EMILIN1_chr2_27073615_27091403	0/0	c0007	3051	2	2	0	0	0	0	copy fasta	EMILIN1	chr2	27073615	27091403
EMILIN1_chr2_27073615_27091403	0/0	c0008	3051	2	0	1	0	0	1	copy fasta	EMILIN1	chr2	27073615	27091403
EMILIN1_chr2_27073615_27091403	0/0	c0009	3051	1	1	0	0	0	0	copy fasta	EMILIN1	chr2	27073615	27091403
EMILIN1_chr2_27073615_27091403	0/0	c0010	3051	1	0	0	0	0	1	copy fasta	EMILIN1	chr2	27073615	27091403
EMILIN1_chr2_27073615_27091403	0/0	c0011	3051	1	0	0	1	0	0	copy fasta	EMILIN1	chr2	27073615	27091403
EMILIN1_chr2_27073615_27091403	0/0	c0012	3051	1	0	0	1	0	0	copy fasta	EMILIN1	chr2	27073615	27091403
EMILIN1_chr2_27073615_27091403	0/0	c0013	3051	1	0	0	1	0	0	copy fasta	EMILIN1	chr2	27073615	27091403
EMILIN1_chr2_27073615_27091403	0/0	c0014	3051	1	0	1	0	0	0	copy fasta	EMILIN1	chr2	27073615	27091403
EMILIN1_chr2_27073615_27091403	0/0	c0015	3051	1	1	0	0	0	0	copy fasta	EMILIN1	chr2	27073615	27091403
EMILIN1_chr2_27073615_27091403	0/0	c0016	3051	1	0	0	1	0	0	copy fasta	EMILIN1	chr2	27073615	27091403
EMILIN2_chr18_2842006_2921003	1/1	c0001	3162	179	34	32	75	13	23	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0002	3162	61	2	4	47	1	7	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0003	3162	44	1	11	30	0	2	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0004	3162	28	7	2	11	1	7	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0005	3162	22	5	5	11	0	1	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0006	3162	13	0	10	0	1	2	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0007	3162	12	0	3	8	0	1	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0008	3162	10	3	6	0	1	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0009	3162	7	1	3	3	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0010	3162	6	5	1	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0011	3150	5	0	0	4	0	1	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0012	3162	4	3	1	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0013	3162	3	3	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0014	3162	3	3	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0015	3162	3	0	0	3	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0016	3162	3	3	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0017	3162	2	2	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0018	3162	2	2	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0019	3162	2	2	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0020	3162	2	1	0	0	0	1	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0021	3162	2	2	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0022	3162	2	0	2	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0023	3162	2	0	0	0	1	1	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0024	3162	2	1	1	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0025	3162	2	1	1	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0026	3162	2	2	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0027	3162	2	2	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0028	3162	1	1	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0029	3162	1	0	0	1	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0030	3162	1	1	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0031	3162	1	0	0	1	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0032	3162	1	0	0	1	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0033	3162	1	0	0	1	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0034	3147	1	0	0	1	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0035	3162	1	0	1	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0036	3162	1	1	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0037	3162	1	1	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0038	3162	1	1	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003