Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADGRG1_chr16_57623630_57670567	0/0	c0003	2064	35	8	12	4	6	5	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	c0004	2064	25	6	11	1	2	5	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	c0005	2064	24	0	0	24	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	c0006	2064	9	9	0	0	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	c0007	2064	8	0	0	8	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	c0008	2064	4	0	3	0	0	1	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	c0009	2064	2	2	0	0	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	c0010	2064	2	2	0	0	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	c0011	2064	1	1	0	0	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	c0012	2064	1	0	0	1	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	c0013	2064	1	1	0	0	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	c0014	2064	1	1	0	0	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	c0015	2064	1	0	0	0	1	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	c0016	2064	1	0	0	0	0	1	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	c0017	2064	1	1	0	0	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	c0018	2064	1	1	0	0	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	c0019	2064	1	0	0	0	1	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	c0020	2064	1	0	0	1	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	c0021	2064	1	0	0	1	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	c0022	2064	1	0	0	1	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	c0023	2064	1	0	0	1	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	c0024	2064	1	1	0	0	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG2_chrX_18984307_19127468	1/1	c0001	3054	163	41	26	72	4	18	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG2_chrX_18984307_19127468	0/0	c0002	3054	9	8	1	0	0	0	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG2_chrX_18984307_19127468	0/0	c0003	3054	5	5	0	0	0	0	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG2_chrX_18984307_19127468	0/0	c0004	3054	2	2	0	0	0	0	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG2_chrX_18984307_19127468	0/0	c0005	3054	2	0	0	2	0	0	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG2_chrX_18984307_19127468	0/0	c0006	3054	2	2	0	0	0	0	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG2_chrX_18984307_19127468	0/0	c0007	3054	1	1	0	0	0	0	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG2_chrX_18984307_19127468	0/0	c0008	3054	1	0	0	1	0	0	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG2_chrX_18984307_19127468	0/0	c0009	3054	1	0	0	0	1	0	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG2_chrX_18984307_19127468	0/0	c0010	3054	1	1	0	0	0	0	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG2_chrX_18984307_19127468	0/0	c0011	3054	1	1	0	0	0	0	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG3_chr16_57663306_57694378	1/1	c0001	1650	258	40	45	138	6	27	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	c0002	1650	94	19	23	29	5	18	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	c0003	1650	26	0	0	24	1	1	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	c0004	1650	22	4	4	8	5	1	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	c0005	1650	13	13	0	0	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	c0006	1650	7	6	1	0	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	c0007	1650	7	7	0	0	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	c0008	1650	3	0	2	0	0	1	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	c0009	1650	2	2	0	0	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	c0010	1650	2	1	1	0	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	c0011	1650	1	0	1	0	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	c0012	1650	1	0	0	1	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	c0013	1650	1	0	0	1	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	c0014	1650	1	0	0	1	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	c0015	1650	1	0	0	0	1	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	c0016	1650	1	0	1	0	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	c0017	1650	1	1	0	0	0	0	copy fasta	ADGRG3	chr16	57663306	57694378