JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EMILIN2_chr18_2842006_2921003	0/0	c0039	3150	1	0	1	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0040	3162	1	0	0	1	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0041	3162	1	1	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0042	3162	1	0	0	1	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0043	3150	1	0	0	1	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0044	3162	1	1	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0045	3162	1	1	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0046	3162	1	1	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0047	3162	1	0	1	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0048	3162	1	1	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0049	3162	1	0	0	0	0	1	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0050	3162	1	1	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0051	3162	1	1	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0052	3162	1	0	1	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0053	3162	1	0	0	0	0	1	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	c0054	3162	1	1	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN3_chr20_41354962_41371818	1/0	c0001	2301	234	49	36	103	14	31	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	c0002	2301	105	0	11	94	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	c0003	2301	23	19	4	0	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	c0004	2301	14	7	2	0	2	3	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	c0005	2301	10	1	7	1	1	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	c0006	2301	7	0	0	6	0	1	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	c0007	2301	5	5	0	0	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	c0008	2301	3	3	0	0	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	c0009	2322	3	3	0	0	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	c0010	2301	3	0	2	0	1	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	c0011	2301	2	0	2	0	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	c0012	2301	2	0	0	2	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	c0013	2301	2	0	0	2	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	c0014	2301	1	0	0	1	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	c0015	2301	1	0	0	1	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	c0016	2301	1	1	0	0	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	c0017	2301	1	0	0	0	0	1	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	c0018	2301	1	1	0	0	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	c0019	2301	1	0	0	0	0	1	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	c0020	2301	1	0	1	0	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	c0021	2301	1	0	0	0	0	1	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	c0022	2301	1	0	0	1	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	c0023	2301	1	0	0	1	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	c0024	2368	1	0	0	0	0	1	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	c0025	2301	1	0	0	1	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	c0026	2301	1	0	1	0	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	c0027	2301	1	0	0	0	0	1	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	c0028	2301	1	1	0	0	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/1	c0029	2301	1	0	0	0	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	c0030	2301	1	0	0	1	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EML1_chr14_99788413_99947060	1/1	c0001	2448	82	4	18	47	2	9	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	c0002	2448	73	5	18	43	1	6	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	c0003	2448	66	50	7	3	4	2	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	c0004	2448	42	12	9	13	3	5	copy fasta	EML1	chr14	99788413	99947060