JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EML1_chr14_99788413_99947060	0/0	c0005	2448	9	8	1	0	0	0	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	c0006	2448	4	0	3	1	0	0	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	c0007	2448	2	2	0	0	0	0	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	c0008	2448	2	2	0	0	0	0	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	c0009	2448	1	0	0	1	0	0	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	c0010	2448	1	0	1	0	0	0	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	c0011	2448	1	1	0	0	0	0	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	c0012	2448	1	1	0	0	0	0	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	c0013	2448	1	0	1	0	0	0	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	c0014	2448	1	1	0	0	0	0	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	c0015	2448	1	1	0	0	0	0	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	c0016	2448	1	1	0	0	0	0	copy fasta	EML1	chr14	99788413	99947060
EML2_chr19_45604400_45644397	1/1	c0001	1950	238	45	50	106	11	24	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	c0002	1950	39	5	2	29	0	3	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	c0003	1950	32	1	12	11	2	6	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	c0004	1950	26	16	0	4	1	5	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	c0005	1950	11	8	2	0	0	1	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	c0006	1950	6	5	1	0	0	0	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	c0007	1950	4	0	0	0	2	2	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	c0008	1950	4	0	3	0	0	1	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	c0009	1950	3	0	2	0	0	1	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	c0010	1950	3	0	0	3	0	0	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	c0011	1950	2	2	0	0	0	0	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	c0012	1950	2	0	0	2	0	0	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	c0013	1950	1	0	0	1	0	0	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	c0014	1950	1	0	0	1	0	0	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	c0015	1950	1	0	0	1	0	0	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	c0016	1950	1	0	0	1	0	0	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	c0017	1950	1	1	0	0	0	0	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	c0018	1950	1	0	0	1	0	0	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	c0019	1950	1	1	0	0	0	0	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	c0020	1950	1	1	0	0	0	0	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	c0021	1950	1	0	0	1	0	0	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	c0022	1950	1	1	0	0	0	0	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	c0023	1936	1	0	0	1	0	0	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	c0024	1950	1	0	0	0	0	1	copy fasta	EML2	chr19	45604400	45644397
EML3_chr11_62597218_62617775	1/1	c0001	2691	198	52	43	79	8	14	copy fasta	EML3	chr11	62597218	62617775
EML3_chr11_62597218_62617775	0/0	c0002	2691	60	20	19	11	1	9	copy fasta	EML3	chr11	62597218	62617775
EML3_chr11_62597218_62617775	0/0	c0003	2691	19	0	0	17	1	1	copy fasta	EML3	chr11	62597218	62617775
EML3_chr11_62597218_62617775	0/0	c0004	2691	11	9	2	0	0	0	copy fasta	EML3	chr11	62597218	62617775
EML3_chr11_62597218_62617775	0/0	c0005	2691	10	0	0	9	0	1	copy fasta	EML3	chr11	62597218	62617775
EML3_chr11_62597218_62617775	0/0	c0006	2691	3	3	0	0	0	0	copy fasta	EML3	chr11	62597218	62617775
EML3_chr11_62597218_62617775	0/0	c0007	2691	2	0	0	0	0	2	copy fasta	EML3	chr11	62597218	62617775
EML3_chr11_62597218_62617775	0/0	c0008	2691	1	1	0	0	0	0	copy fasta	EML3	chr11	62597218	62617775
EML3_chr11_62597218_62617775	0/0	c0009	2691	1	0	0	1	0	0	copy fasta	EML3	chr11	62597218	62617775
EML3_chr11_62597218_62617775	0/0	c0010	2714	1	0	0	1	0	0	copy fasta	EML3	chr11	62597218	62617775
EML3_chr11_62597218_62617775	0/0	c0011	2691	1	0	0	1	0	0	copy fasta	EML3	chr11	62597218	62617775
EML3_chr11_62597218_62617775	0/0	c0012	2691	1	0	0	1	0	0	copy fasta	EML3	chr11	62597218	62617775
EML3_chr11_62597218_62617775	0/0	c0013	2691	1	0	0	1	0	0	copy fasta	EML3	chr11	62597218	62617775
EML3_chr11_62597218_62617775	0/0	c0014	2691	1	0	0	0	0	1	copy fasta	EML3	chr11	62597218	62617775