JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EML3_chr11_62597218_62617775	0/0	c0015	2691	1	0	0	1	0	0	copy fasta	EML3	chr11	62597218	62617775
EML3_chr11_62597218_62617775	0/0	c0016	2691	1	1	0	0	0	0	copy fasta	EML3	chr11	62597218	62617775
EML4_chr2_42164353_42337548	0/1	c0001	2946	170	59	38	46	8	18	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	c0002	2946	107	15	14	68	3	7	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	c0003	2946	59	3	13	38	1	4	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	c0004	2946	5	0	0	5	0	0	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	c0005	2946	5	5	0	0	0	0	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	c0006	2946	4	0	0	4	0	0	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	1/0	c0007	2946	2	0	1	0	0	0	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	c0008	2946	1	1	0	0	0	0	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	c0009	2946	1	0	0	0	0	1	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	c0010	2946	1	1	0	0	0	0	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	c0011	2946	1	1	0	0	0	0	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	c0012	2946	1	1	0	0	0	0	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	c0013	2946	1	0	0	1	0	0	copy fasta	EML4	chr2	42164353	42337548
EML5_chr14_88607431_88797953	1/1	c0001	5934	200	53	41	70	11	23	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	c0002	5934	80	8	19	44	3	6	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	c0003	5934	32	19	0	7	0	6	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	c0004	5934	5	0	3	0	1	1	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	c0005	5934	3	3	0	0	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	c0006	5934	2	0	2	0	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	c0007	5934	2	0	0	2	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	c0008	5934	1	0	0	1	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	c0009	5934	1	1	0	0	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	c0010	5934	1	1	0	0	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	c0011	5934	1	1	0	0	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	c0012	5934	1	0	0	1	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	c0013	5934	1	0	0	1	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	c0014	5934	1	0	0	0	1	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	c0015	5934	1	0	1	0	0	0	copy fasta	EML5	chr14	88607431	88797953
EML6_chr2_54718662_54977025	0/1	c0001	5877	77	8	19	34	9	6	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0002	5877	57	29	9	7	1	11	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0003	5877	38	1	18	10	1	8	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0004	5877	21	4	3	8	2	4	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	1/0	c0005	5877	20	13	3	0	0	3	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0006	5877	6	0	1	0	3	2	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0007	5877	4	4	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0008	5877	3	3	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0009	5877	3	1	2	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0010	5877	3	0	0	1	0	2	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0011	5877	2	1	1	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0012	5877	2	2	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0013	5877	2	0	0	0	0	2	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0014	5877	2	2	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0015	5877	2	2	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0016	5877	1	1	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0017	5877	1	0	0	1	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0018	5877	1	1	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0019	5877	1	0	0	0	0	1	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0020	5877	1	1	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025