JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EML6_chr2_54718662_54977025	0/0	c0021	5877	1	1	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0022	5877	1	1	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0023	5877	1	1	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0024	5877	1	0	0	1	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0025	5877	1	0	0	1	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0026	5877	1	0	1	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0027	5877	1	0	1	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0028	5877	1	1	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0029	5877	1	1	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0030	5877	1	1	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0031	5877	1	1	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0032	5877	1	1	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0033	5877	1	0	0	0	0	1	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0034	5877	1	1	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0035	5877	1	1	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0036	5877	1	1	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	c0037	5877	1	0	0	1	0	0	copy fasta	EML6	chr2	54718662	54977025
EMP1_chr12_13191726_13224941	1/1	c0001	474	432	91	80	197	14	48	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	c0002	474	6	0	3	0	3	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	c0003	474	3	0	0	3	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	c0004	474	2	0	1	0	1	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	c0005	474	1	1	0	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP2_chr16_10523422_10585598	1/1	c0001	504	293	54	51	143	11	32	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	c0002	504	97	27	19	31	3	17	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	c0003	504	8	8	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	c0004	504	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	c0005	504	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	c0006	504	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	c0007	504	1	0	0	0	0	1	copy fasta	EMP2	chr16	10523422	10585598
EMP3_chr19_48320552_48335553	1/1	c0001	492	369	92	69	154	12	40	copy fasta	EMP3	chr19	48320552	48335553
EMP3_chr19_48320552_48335553	0/0	c0002	492	7	0	3	0	4	0	copy fasta	EMP3	chr19	48320552	48335553
EMSY_chr11_76440018_76558031	1/1	c0001	4014	275	57	45	132	11	28	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	c0002	4014	71	16	16	24	5	10	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	c0003	4014	4	4	0	0	0	0	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	c0004	4014	4	1	3	0	0	0	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	c0005	4014	3	0	0	3	0	0	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	c0006	4014	2	2	0	0	0	0	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	c0007	4014	1	0	0	1	0	0	copy fasta	EMSY	chr11	76440018	76558031
EMX1_chr2_72912519_72939891	1/1	c0001	873	305	98	59	96	14	36	copy fasta	EMX1	chr2	72912519	72939891
EMX1_chr2_72912519_72939891	0/0	c0002	873	1	0	1	0	0	0	copy fasta	EMX1	chr2	72912519	72939891
EMX2_chr10_117537746_117554546	1/1	c0001	759	390	85	57	186	16	44	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	c0002	759	9	8	1	0	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	c0003	759	3	1	2	0	0	0	copy fasta	EMX2	chr10	117537746	117554546
EN1_chr2_118837171_118852648	1/1	c0001	1179	397	84	54	199	15	43	copy fasta	EN1	chr2	118837171	118852648
EN1_chr2_118837171_118852648	0/0	c0002	1179	32	1	23	4	3	1	copy fasta	EN1	chr2	118837171	118852648
EN1_chr2_118837171_118852648	0/0	c0003	1179	4	2	2	0	0	0	copy fasta	EN1	chr2	118837171	118852648
EN1_chr2_118837171_118852648	0/0	c0004	1155	3	3	0	0	0	0	copy fasta	EN1	chr2	118837171	118852648
EN1_chr2_118837171_118852648	0/0	c0005	1179	2	0	0	2	0	0	copy fasta	EN1	chr2	118837171	118852648
EN1_chr2_118837171_118852648	0/0	c0006	1179	1	1	0	0	0	0	copy fasta	EN1	chr2	118837171	118852648
EN1_chr2_118837171_118852648	0/0	c0007	1179	1	0	1	0	0	0	copy fasta	EN1	chr2	118837171	118852648