JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ENC1_chr5_74622409_74645728	0/1	c0001	1770	259	47	60	108	11	32	copy fasta	ENC1	chr5	74622409	74645728
ENC1_chr5_74622409_74645728	1/0	c0002	1770	121	11	18	74	3	14	copy fasta	ENC1	chr5	74622409	74645728
ENC1_chr5_74622409_74645728	0/0	c0003	1770	45	34	6	1	2	2	copy fasta	ENC1	chr5	74622409	74645728
ENC1_chr5_74622409_74645728	0/0	c0004	1770	2	0	0	2	0	0	copy fasta	ENC1	chr5	74622409	74645728
ENC1_chr5_74622409_74645728	0/0	c0005	1770	1	0	0	1	0	0	copy fasta	ENC1	chr5	74622409	74645728
ENC1_chr5_74622409_74645728	0/0	c0006	1770	1	1	0	0	0	0	copy fasta	ENC1	chr5	74622409	74645728
ENC1_chr5_74622409_74645728	0/0	c0007	1770	1	1	0	0	0	0	copy fasta	ENC1	chr5	74622409	74645728
ENDOD1_chr11_95084846_95137645	1/1	c0001	1503	247	77	53	88	11	16	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	c0002	1503	70	5	10	35	4	16	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	c0003	1503	24	0	5	11	1	7	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	c0004	1503	14	7	0	6	0	1	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	c0005	1503	4	2	2	0	0	0	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	c0006	1503	2	2	0	0	0	0	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	c0007	1503	2	0	0	0	0	2	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	c0008	1503	1	0	0	1	0	0	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	c0009	1503	1	0	0	1	0	0	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	c0010	1503	1	0	0	1	0	0	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	c0011	1503	1	0	0	1	0	0	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	c0012	1503	1	1	0	0	0	0	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOG_chr9_128813500_128827676	0/1	c0001	894	200	7	49	112	11	20	copy fasta	ENDOG	chr9	128813500	128827676
ENDOG_chr9_128813500_128827676	1/0	c0002	894	136	57	20	39	1	18	copy fasta	ENDOG	chr9	128813500	128827676
ENDOG_chr9_128813500_128827676	0/0	c0003	894	57	11	3	36	1	6	copy fasta	ENDOG	chr9	128813500	128827676
ENDOG_chr9_128813500_128827676	0/0	c0004	894	9	0	0	9	0	0	copy fasta	ENDOG	chr9	128813500	128827676
ENDOG_chr9_128813500_128827676	0/0	c0005	894	9	8	1	0	0	0	copy fasta	ENDOG	chr9	128813500	128827676
ENDOG_chr9_128813500_128827676	0/0	c0006	894	2	2	0	0	0	0	copy fasta	ENDOG	chr9	128813500	128827676
ENDOG_chr9_128813500_128827676	0/0	c0007	894	2	2	0	0	0	0	copy fasta	ENDOG	chr9	128813500	128827676
ENDOG_chr9_128813500_128827676	0/0	c0008	894	1	1	0	0	0	0	copy fasta	ENDOG	chr9	128813500	128827676
ENDOG_chr9_128813500_128827676	0/0	c0009	894	1	0	0	1	0	0	copy fasta	ENDOG	chr9	128813500	128827676
ENDOG_chr9_128813500_128827676	0/0	c0010	894	1	0	1	0	0	0	copy fasta	ENDOG	chr9	128813500	128827676
ENDOG_chr9_128813500_128827676	0/0	c0011	894	1	0	0	0	1	0	copy fasta	ENDOG	chr9	128813500	128827676
ENDOG_chr9_128813500_128827676	0/0	c0012	894	1	0	0	1	0	0	copy fasta	ENDOG	chr9	128813500	128827676
ENDOU_chr12_47704734_47730490	1/1	c0001	1233	380	71	61	187	16	43	copy fasta	ENDOU	chr12	47704734	47730490
ENDOU_chr12_47704734_47730490	0/0	c0002	1233	9	7	1	1	0	0	copy fasta	ENDOU	chr12	47704734	47730490
ENDOU_chr12_47704734_47730490	0/0	c0003	1233	7	7	0	0	0	0	copy fasta	ENDOU	chr12	47704734	47730490
ENDOU_chr12_47704734_47730490	0/0	c0004	1233	5	0	0	5	0	0	copy fasta	ENDOU	chr12	47704734	47730490
ENDOU_chr12_47704734_47730490	0/0	c0005	1233	4	4	0	0	0	0	copy fasta	ENDOU	chr12	47704734	47730490
ENDOU_chr12_47704734_47730490	0/0	c0006	1233	3	3	0	0	0	0	copy fasta	ENDOU	chr12	47704734	47730490
ENDOU_chr12_47704734_47730490	0/0	c0007	1233	2	1	1	0	0	0	copy fasta	ENDOU	chr12	47704734	47730490
ENDOU_chr12_47704734_47730490	0/0	c0008	1233	2	1	1	0	0	0	copy fasta	ENDOU	chr12	47704734	47730490
ENDOU_chr12_47704734_47730490	0/0	c0009	1233	2	0	1	0	0	1	copy fasta	ENDOU	chr12	47704734	47730490
ENDOU_chr12_47704734_47730490	0/0	c0010	1233	2	0	0	2	0	0	copy fasta	ENDOU	chr12	47704734	47730490
ENDOU_chr12_47704734_47730490	0/0	c0011	1233	2	0	0	2	0	0	copy fasta	ENDOU	chr12	47704734	47730490
ENDOU_chr12_47704734_47730490	0/0	c0012	1233	1	0	1	0	0	0	copy fasta	ENDOU	chr12	47704734	47730490
ENDOU_chr12_47704734_47730490	0/0	c0013	1233	1	1	0	0	0	0	copy fasta	ENDOU	chr12	47704734	47730490
ENDOU_chr12_47704734_47730490	0/0	c0014	1233	1	1	0	0	0	0	copy fasta	ENDOU	chr12	47704734	47730490
ENDOU_chr12_47704734_47730490	0/0	c0015	1233	1	0	0	1	0	0	copy fasta	ENDOU	chr12	47704734	47730490
ENDOV_chr17_80410167_80443086	1/1	c0001	849	360	73	64	172	14	35	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	c0002	849	23	8	9	0	3	3	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	c0003	849	7	0	0	7	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	c0004	849	6	6	0	0	0	0	copy fasta	ENDOV	chr17	80410167	80443086