JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ENDOV_chr17_80410167_80443086	0/0	c0005	849	5	0	3	0	0	2	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	c0006	849	4	4	0	0	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	c0007	849	4	0	2	2	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	c0008	849	3	0	0	3	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	c0009	849	2	0	0	0	0	2	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	c0010	849	1	1	0	0	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	c0011	849	1	0	0	0	1	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	c0012	849	1	0	0	0	0	1	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	c0013	849	1	0	0	1	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	c0014	849	1	0	0	0	0	1	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	c0015	849	1	0	0	1	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENGASE_chr17_79069824_79093599	1/0	c0001	2232	139	17	31	61	11	18	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0002	2232	43	2	3	37	0	1	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0003	2232	42	1	2	32	1	6	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0004	2232	19	10	2	3	0	4	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0005	2232	18	0	10	4	0	4	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0006	2232	13	0	0	11	0	2	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0007	2232	11	7	1	2	0	1	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0008	2232	11	6	4	0	0	1	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0009	2232	9	9	0	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0010	2232	7	1	6	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0011	2232	7	0	0	7	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0012	2232	7	7	0	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0013	2232	7	7	0	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0014	2232	7	1	5	0	1	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0015	2232	6	0	0	6	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0016	2232	6	0	0	6	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0017	2232	5	0	0	3	0	2	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0018	2232	4	1	2	0	0	1	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0019	2232	3	0	0	1	0	2	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/1	c0020	2232	3	0	2	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0021	2232	3	2	1	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0022	2232	3	3	0	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0023	2232	3	0	3	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0024	2232	3	0	1	0	2	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0025	2232	3	2	1	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0026	2232	2	2	0	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0027	2232	2	0	0	1	0	1	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0028	2232	2	2	0	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0029	2232	2	2	0	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0030	2232	2	2	0	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0031	2232	1	0	0	1	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0032	2232	1	0	0	0	0	1	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0033	2232	1	0	0	1	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0034	2232	1	0	0	1	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0035	2232	1	1	0	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0036	2232	1	0	0	0	0	1	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0037	2232	1	1	0	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0038	2232	1	0	0	1	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0039	2232	1	1	0	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599