JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ENGASE_chr17_79069824_79093599	0/0	c0040	2232	1	1	0	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0041	2232	1	0	1	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0042	2232	1	0	0	0	0	1	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0043	2232	1	0	1	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0044	2232	1	0	0	1	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0045	2232	1	0	1	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0046	2232	1	0	0	1	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0047	2232	1	0	1	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0048	2232	1	0	0	0	0	1	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0049	2232	1	1	0	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0050	2232	1	1	0	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0051	2232	1	1	0	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0052	2232	1	1	0	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0053	2232	1	1	0	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0054	2232	1	1	0	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0055	2232	1	0	0	0	0	1	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0056	2232	1	1	0	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0057	2232	1	0	0	0	1	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	c0058	2232	1	1	0	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENG_chr9_127810016_127859658	1/1	c0001	1977	230	44	36	107	9	32	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	c0002	1977	35	21	7	5	1	1	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	c0003	1977	18	2	3	4	1	8	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	c0004	1977	15	0	0	15	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	c0005	1977	11	8	3	0	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	c0006	1977	5	3	1	0	0	1	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	c0007	1977	4	0	2	2	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	c0008	1977	2	1	1	0	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	c0009	1977	2	2	0	0	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	c0010	1977	2	0	0	2	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	c0011	1977	1	0	0	0	1	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	c0012	1977	1	0	0	1	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	c0013	1977	1	0	1	0	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	c0014	1977	1	1	0	0	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	c0015	1977	1	1	0	0	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	c0016	1977	1	1	0	0	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	c0017	1977	1	0	0	1	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	c0018	1977	1	1	0	0	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	c0019	1977	1	0	1	0	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	c0020	1977	1	1	0	0	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	c0021	1977	1	0	0	1	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	c0022	1977	1	1	0	0	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	c0023	1977	1	0	1	0	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	c0024	1977	1	1	0	0	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	c0025	1977	1	0	1	0	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	c0026	1977	1	0	0	0	0	1	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	c0027	1977	1	0	0	0	0	1	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	c0028	1977	1	0	1	0	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	c0029	1977	1	1	0	0	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	c0030	1977	1	1	0	0	0	0	copy fasta	ENG	chr9	127810016	127859658
ENHO_chr9_34516043_34527990	1/1	c0001	231	414	93	88	178	14	39	copy fasta	ENHO	chr9	34516043	34527990