JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ENHO_chr9_34516043_34527990	0/0	c0002	231	1	0	0	0	0	1	copy fasta	ENHO	chr9	34516043	34527990
ENHO_chr9_34516043_34527990	0/0	c0003	231	1	1	0	0	0	0	copy fasta	ENHO	chr9	34516043	34527990
ENKD1_chr16_67657945_67671750	1/1	c0001	1041	259	84	49	79	8	37	copy fasta	ENKD1	chr16	67657945	67671750
ENKD1_chr16_67657945_67671750	0/0	c0002	1041	6	1	5	0	0	0	copy fasta	ENKD1	chr16	67657945	67671750
ENKD1_chr16_67657945_67671750	0/0	c0003	1041	3	3	0	0	0	0	copy fasta	ENKD1	chr16	67657945	67671750
ENKD1_chr16_67657945_67671750	0/0	c0004	1041	1	0	1	0	0	0	copy fasta	ENKD1	chr16	67657945	67671750
ENKD1_chr16_67657945_67671750	0/0	c0005	1041	1	1	0	0	0	0	copy fasta	ENKD1	chr16	67657945	67671750
ENKD1_chr16_67657945_67671750	0/0	c0006	1041	1	1	0	0	0	0	copy fasta	ENKD1	chr16	67657945	67671750
ENKD1_chr16_67657945_67671750	0/0	c0007	1041	1	0	0	1	0	0	copy fasta	ENKD1	chr16	67657945	67671750
ENKD1_chr16_67657945_67671750	0/0	c0008	1041	1	0	0	0	0	1	copy fasta	ENKD1	chr16	67657945	67671750
ENKD1_chr16_67657945_67671750	0/0	c0009	1041	1	0	1	0	0	0	copy fasta	ENKD1	chr16	67657945	67671750
ENKUR_chr10_24976985_25021158	1/1	c0001	771	371	82	68	166	14	39	copy fasta	ENKUR	chr10	24976985	25021158
ENKUR_chr10_24976985_25021158	0/0	c0002	771	8	0	0	8	0	0	copy fasta	ENKUR	chr10	24976985	25021158
ENKUR_chr10_24976985_25021158	0/0	c0003	771	1	1	0	0	0	0	copy fasta	ENKUR	chr10	24976985	25021158
ENKUR_chr10_24976985_25021158	0/0	c0004	771	1	1	0	0	0	0	copy fasta	ENKUR	chr10	24976985	25021158
ENKUR_chr10_24976985_25021158	0/0	c0005	771	1	1	0	0	0	0	copy fasta	ENKUR	chr10	24976985	25021158
ENKUR_chr10_24976985_25021158	0/0	c0006	771	1	1	0	0	0	0	copy fasta	ENKUR	chr10	24976985	25021158
ENKUR_chr10_24976985_25021158	0/0	c0007	771	1	0	0	0	0	1	copy fasta	ENKUR	chr10	24976985	25021158
ENO1_chr1_8856000_8883686	1/1	c0001	1305	399	79	69	189	12	48	copy fasta	ENO1	chr1	8856000	8883686
ENO1_chr1_8856000_8883686	0/0	c0002	1305	10	10	0	0	0	0	copy fasta	ENO1	chr1	8856000	8883686
ENO1_chr1_8856000_8883686	0/0	c0003	1305	3	3	0	0	0	0	copy fasta	ENO1	chr1	8856000	8883686
ENO1_chr1_8856000_8883686	0/0	c0004	1305	1	0	1	0	0	0	copy fasta	ENO1	chr1	8856000	8883686
ENO1_chr1_8856000_8883686	0/0	c0005	1305	1	0	0	1	0	0	copy fasta	ENO1	chr1	8856000	8883686
ENO2_chr12_6909580_6928697	1/1	c0001	1305	371	81	58	168	14	48	copy fasta	ENO2	chr12	6909580	6928697
ENO2_chr12_6909580_6928697	0/0	c0002	1305	3	0	0	3	0	0	copy fasta	ENO2	chr12	6909580	6928697
ENO2_chr12_6909580_6928697	0/0	c0003	1305	1	1	0	0	0	0	copy fasta	ENO2	chr12	6909580	6928697
ENO2_chr12_6909580_6928697	0/0	c0004	1305	1	0	0	1	0	0	copy fasta	ENO2	chr12	6909580	6928697
ENO3_chr17_4946119_4962129	1/1	c0001	1305	186	32	15	107	10	20	copy fasta	ENO3	chr17	4946119	4962129
ENO3_chr17_4946119_4962129	0/0	c0002	1305	132	31	27	69	1	4	copy fasta	ENO3	chr17	4946119	4962129
ENO3_chr17_4946119_4962129	0/0	c0003	1305	94	10	34	26	5	19	copy fasta	ENO3	chr17	4946119	4962129
ENO3_chr17_4946119_4962129	0/0	c0004	1305	6	6	0	0	0	0	copy fasta	ENO3	chr17	4946119	4962129
ENO3_chr17_4946119_4962129	0/0	c0005	1305	4	4	0	0	0	0	copy fasta	ENO3	chr17	4946119	4962129
ENO3_chr17_4946119_4962129	0/0	c0006	1305	4	4	0	0	0	0	copy fasta	ENO3	chr17	4946119	4962129
ENO3_chr17_4946119_4962129	0/0	c0007	1305	2	0	0	2	0	0	copy fasta	ENO3	chr17	4946119	4962129
ENO3_chr17_4946119_4962129	0/0	c0008	1305	2	0	2	0	0	0	copy fasta	ENO3	chr17	4946119	4962129
ENO3_chr17_4946119_4962129	0/0	c0009	1305	1	0	0	1	0	0	copy fasta	ENO3	chr17	4946119	4962129
ENO3_chr17_4946119_4962129	0/0	c0010	1329	1	0	0	1	0	0	copy fasta	ENO3	chr17	4946119	4962129
ENO3_chr17_4946119_4962129	0/0	c0011	1305	1	0	0	1	0	0	copy fasta	ENO3	chr17	4946119	4962129
ENO3_chr17_4946119_4962129	0/0	c0012	1305	1	0	0	0	0	1	copy fasta	ENO3	chr17	4946119	4962129
ENO3_chr17_4946119_4962129	0/0	c0013	1305	1	0	0	1	0	0	copy fasta	ENO3	chr17	4946119	4962129
ENO3_chr17_4946119_4962129	0/0	c0014	1305	1	0	1	0	0	0	copy fasta	ENO3	chr17	4946119	4962129
ENO3_chr17_4946119_4962129	0/0	c0015	1305	1	1	0	0	0	0	copy fasta	ENO3	chr17	4946119	4962129
ENO3_chr17_4946119_4962129	0/0	c0016	1305	1	0	1	0	0	0	copy fasta	ENO3	chr17	4946119	4962129
ENO3_chr17_4946119_4962129	0/0	c0017	1305	1	1	0	0	0	0	copy fasta	ENO3	chr17	4946119	4962129
ENO3_chr17_4946119_4962129	0/0	c0018	1305	1	1	0	0	0	0	copy fasta	ENO3	chr17	4946119	4962129
ENO4_chr10_116844499_116887601	1/0	c0001	1878	163	46	15	83	4	14	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/1	c0002	1878	154	30	30	75	2	16	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	c0003	1878	66	6	26	18	8	8	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	c0004	1878	9	0	0	9	0	0	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	c0005	1878	1	1	0	0	0	0	copy fasta	ENO4	chr10	116844499	116887601