Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADGRG3_chr16_57663306_57694378	0/0	c0018	1650	1	1	0	0	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	c0019	1650	1	1	0	0	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	c0020	1650	1	1	0	0	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	c0021	1650	1	1	0	0	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	c0022	1650	1	1	0	0	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	c0023	1650	1	0	1	0	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	c0024	1650	1	0	1	0	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG4_chrX_136295963_136421890	0/0	c0001	9240	77	24	17	25	4	7	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0002	9240	57	1	7	39	2	8	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	1/1	c0003	9243	35	12	9	8	1	3	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0004	9240	6	1	1	4	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0005	9240	6	5	1	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0006	9240	5	0	0	5	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0007	9240	3	0	0	3	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0008	9243	2	0	2	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0009	9243	2	0	1	0	0	1	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0010	9240	2	0	0	2	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0011	9240	1	1	0	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0012	9240	1	0	0	1	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0013	9240	1	1	0	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0014	9240	1	1	0	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0015	9240	1	1	0	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0016	9240	1	0	1	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0017	9240	1	0	0	1	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0018	9240	1	0	0	1	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0019	9243	1	1	0	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0020	9240	1	0	0	0	0	1	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0021	9243	1	1	0	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0022	9240	1	1	0	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0023	9243	1	1	0	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0024	9240	1	0	0	1	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0025	9243	1	0	0	0	0	1	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0026	9242	1	0	0	1	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0027	9243	1	0	0	1	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0028	9243	1	1	0	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0029	9240	1	0	0	1	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0030	9243	1	0	0	0	0	1	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0031	9240	1	0	0	0	0	1	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0032	9240	1	0	1	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0033	9240	1	1	0	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0034	9240	1	0	0	0	0	1	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0035	9243	1	0	0	1	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0036	9241	1	0	0	1	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0037	9240	1	0	0	0	0	1	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0038	9240	1	1	0	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0039	9240	1	1	0	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0040	9240	1	0	1	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0041	9240	1	0	0	1	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0042	9240	1	0	0	0	0	1	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	c0043	9240	1	0	0	1	0	0	copy fasta	ADGRG4	chrX	136295963	136421890