JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ENPP2_chr8_119552086_119643839	0/0	c0011	2592	2	2	0	0	0	0	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	c0012	2592	2	2	0	0	0	0	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	c0013	2592	2	0	0	2	0	0	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	c0014	2592	1	0	1	0	0	0	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	c0015	2592	1	0	0	0	0	1	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	c0016	2592	1	0	0	0	1	0	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	c0017	2592	1	0	1	0	0	0	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	c0018	2592	1	0	0	1	0	0	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	c0019	2592	1	0	0	1	0	0	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	c0020	2592	1	0	0	1	0	0	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	c0021	2592	1	0	0	0	0	1	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	c0022	2592	1	0	0	1	0	0	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	c0023	2592	1	0	0	0	0	1	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	c0024	2592	1	0	0	0	0	1	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	c0025	2592	1	1	0	0	0	0	copy fasta	ENPP2	chr8	119552086	119643839
ENPP3_chr6_131632302_131752410	1/1	c0001	2628	148	37	34	54	9	12	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	0/0	c0002	2628	91	26	9	46	2	8	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	0/0	c0003	2628	6	0	2	1	0	3	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	0/0	c0004	2628	6	6	0	0	0	0	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	0/0	c0005	2628	4	4	0	0	0	0	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	0/0	c0006	2628	4	0	3	0	0	1	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	0/0	c0007	2628	3	3	0	0	0	0	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	0/0	c0008	2628	3	3	0	0	0	0	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	0/0	c0009	2628	2	2	0	0	0	0	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	0/0	c0010	2628	2	0	0	2	0	0	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	0/0	c0011	2628	1	1	0	0	0	0	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	0/0	c0012	2628	1	1	0	0	0	0	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	0/0	c0013	2628	1	0	0	1	0	0	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	0/0	c0014	2628	1	1	0	0	0	0	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	0/0	c0015	2628	1	1	0	0	0	0	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	0/0	c0016	2628	1	1	0	0	0	0	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	0/0	c0017	2628	1	1	0	0	0	0	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	0/0	c0018	2628	1	1	0	0	0	0	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	0/0	c0019	2628	1	0	0	0	1	0	copy fasta	ENPP3	chr6	131632302	131752410
ENPP4_chr6_46124989_46151688	1/1	c0001	1362	176	54	30	80	2	8	copy fasta	ENPP4	chr6	46124989	46151688
ENPP4_chr6_46124989_46151688	0/0	c0002	1362	173	24	36	73	9	31	copy fasta	ENPP4	chr6	46124989	46151688
ENPP4_chr6_46124989_46151688	0/0	c0003	1362	54	10	8	35	1	0	copy fasta	ENPP4	chr6	46124989	46151688
ENPP4_chr6_46124989_46151688	0/0	c0004	1362	20	0	2	18	0	0	copy fasta	ENPP4	chr6	46124989	46151688
ENPP4_chr6_46124989_46151688	0/0	c0005	1362	1	0	0	1	0	0	copy fasta	ENPP4	chr6	46124989	46151688
ENPP4_chr6_46124989_46151688	0/0	c0006	1362	1	0	0	0	0	1	copy fasta	ENPP4	chr6	46124989	46151688
ENPP4_chr6_46124989_46151688	0/0	c0007	1362	1	0	0	1	0	0	copy fasta	ENPP4	chr6	46124989	46151688
ENPP5_chr6_46154185_46175980	1/1	c0001	1434	228	73	30	113	2	8	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	c0002	1434	184	19	27	91	13	34	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	c0003	1434	8	0	0	7	0	1	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	c0004	1434	7	0	6	0	0	1	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	c0005	1434	3	0	0	3	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	c0006	1434	2	0	0	2	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	c0007	1434	2	2	0	0	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	c0008	1434	2	0	2	0	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	c0009	1434	1	0	1	0	0	0	copy fasta	ENPP5	chr6	46154185	46175980