JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ENPP5_chr6_46154185_46175980	0/0	c0010	1434	1	0	0	1	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	c0011	1434	1	0	1	0	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	c0012	1434	1	0	0	0	1	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	c0013	1434	1	0	1	0	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	c0014	1434	1	1	0	0	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	c0015	1434	1	1	0	0	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	c0016	1434	1	0	0	1	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP6_chr4_184083706_184222873	1/0	c0001	1323	135	25	36	46	7	20	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/1	c0002	1323	129	19	25	61	2	21	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	c0003	1323	41	31	8	1	0	1	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	c0004	1323	3	3	0	0	0	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	c0005	1323	1	0	1	0	0	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	c0006	1323	1	1	0	0	0	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	c0007	1323	1	1	0	0	0	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	c0008	1323	1	0	0	1	0	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	c0009	1323	1	1	0	0	0	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	c0010	1323	1	0	0	0	1	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	c0011	1323	1	1	0	0	0	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	c0012	1323	1	1	0	0	0	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	c0013	1323	1	0	0	0	1	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	c0014	1323	1	0	0	0	1	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	c0015	1323	1	0	0	1	0	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	c0016	1323	1	1	0	0	0	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP7_chr17_79725943_79747219	0/1	c0001	1377	161	16	43	68	12	21	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	c0002	1377	88	33	18	22	6	9	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	1/0	c0003	1377	86	8	7	63	0	7	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	c0004	1377	16	0	1	10	0	5	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	c0005	1377	14	12	2	0	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	c0006	1377	5	5	0	0	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	c0007	1377	5	0	2	3	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	c0008	1377	4	0	0	4	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	c0009	1377	4	4	0	0	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	c0010	1377	4	3	1	0	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	c0011	1377	4	3	1	0	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	c0012	1377	4	0	2	2	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	c0013	1377	3	1	2	0	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	c0014	1377	3	0	0	3	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	c0015	1377	3	2	1	0	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	c0016	1377	3	0	0	0	0	3	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	c0017	1377	2	2	0	0	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	c0018	1377	2	2	0	0	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	c0019	1377	2	0	0	2	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	c0020	1377	2	1	0	1	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	c0021	1377	2	0	0	2	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	c0022	1377	2	2	0	0	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	c0023	1377	1	1	0	0	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	c0024	1377	1	0	0	1	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	c0025	1377	1	0	0	0	0	1	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	c0026	1377	1	0	0	1	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	c0027	1377	1	1	0	0	0	0	copy fasta	ENPP7	chr17	79725943	79747219