JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ENPP7_chr17_79725943_79747219	0/0	c0028	1377	1	0	0	0	0	1	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	c0029	1377	1	0	0	0	0	1	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	c0030	1377	1	1	0	0	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	c0031	1377	1	0	0	1	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	c0032	1377	1	1	0	0	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	c0033	1377	1	0	0	1	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENSA_chr1_150617125_150634612	1/1	c0001	366	420	91	68	193	18	48	copy fasta	ENSA	chr1	150617125	150634612
ENSA_chr1_150617125_150634612	0/0	c0002	366	1	0	0	1	0	0	copy fasta	ENSA	chr1	150617125	150634612
ENSA_chr1_150617125_150634612	0/0	c0003	366	1	1	0	0	0	0	copy fasta	ENSA	chr1	150617125	150634612
ENTHD1_chr22_39738044_39898760	1/1	c0001	1824	200	50	41	80	6	21	copy fasta	ENTHD1	chr22	39738044	39898760
ENTHD1_chr22_39738044_39898760	0/0	c0002	1824	8	0	7	0	0	1	copy fasta	ENTHD1	chr22	39738044	39898760
ENTHD1_chr22_39738044_39898760	0/0	c0003	1824	3	3	0	0	0	0	copy fasta	ENTHD1	chr22	39738044	39898760
ENTHD1_chr22_39738044_39898760	0/0	c0004	1824	2	2	0	0	0	0	copy fasta	ENTHD1	chr22	39738044	39898760
ENTHD1_chr22_39738044_39898760	0/0	c0005	1824	1	1	0	0	0	0	copy fasta	ENTHD1	chr22	39738044	39898760
ENTHD1_chr22_39738044_39898760	0/0	c0006	1824	1	1	0	0	0	0	copy fasta	ENTHD1	chr22	39738044	39898760
ENTHD1_chr22_39738044_39898760	0/0	c0007	1824	1	0	0	1	0	0	copy fasta	ENTHD1	chr22	39738044	39898760
ENTHD1_chr22_39738044_39898760	0/0	c0008	1824	1	0	0	1	0	0	copy fasta	ENTHD1	chr22	39738044	39898760
ENTHD1_chr22_39738044_39898760	0/0	c0009	1824	1	1	0	0	0	0	copy fasta	ENTHD1	chr22	39738044	39898760
ENTPD1_chr10_95751163_95882266	1/1	c0001	1533	297	56	74	116	15	34	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	c0002	1533	32	4	2	18	3	5	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	c0003	1533	5	4	0	1	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	c0004	1533	2	0	0	2	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	c0005	1533	2	2	0	0	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	c0006	1533	1	0	0	0	0	1	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	c0007	1533	1	0	0	1	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD2_chr9_137043107_137059061	0/1	c0001	1488	184	46	28	89	5	15	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	c0002	1488	91	1	31	45	3	11	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	1/0	c0003	1488	88	21	24	22	6	14	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	c0004	1488	7	7	0	0	0	0	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	c0005	1488	6	0	0	6	0	0	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	c0006	1488	5	5	0	0	0	0	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	c0007	1488	3	0	0	3	0	0	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	c0008	1488	2	0	0	2	0	0	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	c0009	1488	2	2	0	0	0	0	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	c0010	1488	2	0	0	0	2	0	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	c0011	1488	1	1	0	0	0	0	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	c0012	1488	1	0	1	0	0	0	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	c0013	1488	1	0	0	0	0	1	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	c0014	1488	1	0	0	1	0	0	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	c0015	1488	1	0	0	0	0	1	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	c0016	1488	1	0	0	1	0	0	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	c0017	1488	1	0	0	1	0	0	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	c0018	1488	1	1	0	0	0	0	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	c0019	1488	1	1	0	0	0	0	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	c0020	1488	1	1	0	0	0	0	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD3_chr3_40382184_40433744	1/0	c0001	1590	234	78	32	88	10	25	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/1	c0002	1590	112	7	21	62	4	17	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	c0003	1590	8	0	0	8	0	0	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	c0004	1590	5	5	0	0	0	0	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	c0005	1590	2	0	0	2	0	0	copy fasta	ENTPD3	chr3	40382184	40433744