JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ENTPD3_chr3_40382184_40433744	0/0	c0006	1590	2	0	0	2	0	0	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	c0007	1590	2	2	0	0	0	0	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	c0008	1590	2	0	0	0	0	2	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	c0009	1590	1	0	0	1	0	0	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	c0010	1590	1	0	0	1	0	0	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	c0011	1699	1	1	0	0	0	0	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	c0012	1590	1	0	1	0	0	0	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	c0013	1590	1	0	0	1	0	0	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	c0014	1590	1	0	0	1	0	0	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	c0015	1485	1	1	0	0	0	0	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD4_chr8_23424162_23462647	1/1	c0001	1851	235	59	37	105	13	19	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	c0002	1851	78	12	19	45	1	1	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	c0003	1851	50	10	6	25	0	9	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	c0004	1851	28	1	8	13	0	6	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	c0005	1851	5	4	1	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	c0006	1851	4	4	0	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	c0007	1851	2	2	0	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	c0008	1851	2	0	0	2	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	c0009	1851	1	0	0	1	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	c0010	1851	1	0	0	1	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	c0011	1851	1	0	1	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	c0012	1851	1	0	0	1	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	c0013	1851	1	0	0	0	0	1	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	c0014	1851	1	0	0	1	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	c0015	1851	1	1	0	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	c0016	1851	1	1	0	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD5_chr14_73958230_74024288	1/1	c0001	1287	199	51	24	95	7	20	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	c0002	1287	168	31	44	57	9	27	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	c0003	1287	5	5	0	0	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	c0004	1287	2	2	0	0	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	c0005	1287	2	0	0	2	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	c0006	1287	2	2	0	0	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	c0007	1287	1	1	0	0	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	c0008	1287	1	0	0	0	0	1	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD6_chr20_25190712_25233075	0/0	c0001	1455	228	73	44	68	11	32	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/1	c0002	1455	126	4	29	73	3	16	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	c0003	1455	8	8	0	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	c0004	1455	4	3	1	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	c0005	1455	3	3	0	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	c0006	1455	3	3	0	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	c0007	1455	2	0	2	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	c0008	1455	1	1	0	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	c0009	1455	1	0	0	1	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	c0010	1455	1	0	0	1	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	1/0	c0011	1455	1	0	0	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	c0012	1455	1	1	0	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	c0013	1455	1	0	0	1	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD7_chr10_99654509_99716241	1/1	c0001	1815	294	54	63	132	12	31	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	c0002	1815	94	16	16	48	4	10	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	c0003	1815	5	5	0	0	0	0	copy fasta	ENTPD7	chr10	99654509	99716241