JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ENTPD7_chr10_99654509_99716241	0/0	c0004	1815	4	4	0	0	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	c0005	1815	3	3	0	0	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	c0006	1815	1	0	0	1	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	c0007	1815	1	1	0	0	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	c0008	1815	1	0	0	1	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	c0009	1815	1	0	0	1	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	c0010	1815	1	0	1	0	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	c0011	1815	1	1	0	0	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	c0012	1815	1	0	0	1	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	c0013	1815	1	0	0	0	0	1	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD8_chr9_137429364_137446357	0/1	c0001	1488	334	67	66	144	14	42	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	1/0	c0002	1488	12	2	7	0	0	2	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	c0003	1488	7	0	1	6	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	c0004	1488	6	6	0	0	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	c0005	1488	6	6	0	0	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	c0006	1488	3	2	1	0	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	c0007	1488	3	3	0	0	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	c0008	1488	2	0	2	0	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	c0009	1488	2	2	0	0	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	c0010	1488	2	0	0	0	2	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	c0011	1488	2	0	0	0	0	2	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	c0012	1488	1	1	0	0	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	c0013	1488	1	1	0	0	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	c0014	1488	1	1	0	0	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	c0015	1488	1	1	0	0	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	c0016	1488	1	1	0	0	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	c0017	1488	1	0	0	1	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	c0018	1488	1	0	1	0	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	c0019	1488	1	1	0	0	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	c0020	1488	1	0	0	1	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	c0021	1488	1	0	0	0	0	1	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	c0022	1488	1	1	0	0	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	c0023	1488	1	0	0	0	0	1	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	c0024	1488	1	1	0	0	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTR1_chr9_136396922_136415614	1/0	c0001	1308	236	61	37	103	12	22	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	c0002	1308	54	13	18	12	1	10	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/1	c0003	1308	42	1	13	19	4	4	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	c0004	1308	34	8	0	21	1	4	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	c0005	1309	6	1	1	4	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	c0006	1308	5	4	1	0	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	c0007	1309	4	0	1	3	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	c0008	1309	3	1	1	1	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	c0009	1308	3	0	2	0	0	1	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	c0010	1308	2	0	2	0	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	c0011	1308	2	2	0	0	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	c0012	1308	2	0	0	2	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	c0013	1308	2	1	1	0	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	c0014	1308	2	1	1	0	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	c0015	1309	1	0	1	0	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	c0016	1309	1	0	0	1	0	0	copy fasta	ENTR1	chr9	136396922	136415614