JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ENTR1_chr9_136396922_136415614	0/0	c0017	1309	1	0	0	0	0	1	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	c0018	1308	1	1	0	0	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	c0019	1308	1	0	0	1	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	c0020	1308	1	1	0	0	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	c0021	1308	1	0	0	1	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	c0022	1308	1	0	1	0	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	c0023	1308	1	0	1	0	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	c0024	1308	1	0	0	1	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	c0025	1308	1	0	1	0	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	c0026	1308	1	0	0	1	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	c0027	1308	1	1	0	0	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	c0028	1308	1	1	0	0	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	c0029	1308	1	1	0	0	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTREP1_chr9_69320215_69397456	1/1	c0001	1812	327	75	54	141	14	41	copy fasta	ENTREP1	chr9	69320215	69397456
ENTREP1_chr9_69320215_69397456	0/0	c0002	1812	6	5	1	0	0	0	copy fasta	ENTREP1	chr9	69320215	69397456
ENTREP1_chr9_69320215_69397456	0/0	c0003	1812	3	2	1	0	0	0	copy fasta	ENTREP1	chr9	69320215	69397456
ENTREP1_chr9_69320215_69397456	0/0	c0004	1812	1	1	0	0	0	0	copy fasta	ENTREP1	chr9	69320215	69397456
ENTREP1_chr9_69320215_69397456	0/0	c0005	1812	1	1	0	0	0	0	copy fasta	ENTREP1	chr9	69320215	69397456
ENTREP1_chr9_69320215_69397456	0/0	c0006	1812	1	1	0	0	0	0	copy fasta	ENTREP1	chr9	69320215	69397456
ENTREP1_chr9_69320215_69397456	0/0	c0007	1812	1	0	0	1	0	0	copy fasta	ENTREP1	chr9	69320215	69397456
ENTREP1_chr9_69320215_69397456	0/0	c0008	1812	1	0	0	0	0	1	copy fasta	ENTREP1	chr9	69320215	69397456
ENTREP1_chr9_69320215_69397456	0/0	c0009	1812	1	1	0	0	0	0	copy fasta	ENTREP1	chr9	69320215	69397456
ENTREP2_chr15_29115252_29575979	0/0	c0001	1620	16	1	6	5	2	2	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0002	1620	11	3	4	4	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0003	1620	10	7	2	1	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	1/0	c0004	1620	9	3	4	1	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0005	1620	8	5	0	2	0	1	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0006	1620	6	6	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0007	1620	6	6	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0008	1620	5	5	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0009	1620	4	4	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0010	1620	4	2	1	1	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0011	1620	3	2	1	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0012	1620	3	3	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0013	1620	3	0	2	1	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0014	1620	3	3	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0015	1620	3	2	0	0	0	1	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0016	1620	2	2	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0017	1620	2	0	0	2	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0018	1620	2	2	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0019	1620	2	1	1	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0020	1620	2	0	0	2	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0021	1620	2	0	2	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0022	1620	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0023	1620	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0024	1620	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0025	1620	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0026	1620	1	0	1	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0027	1620	1	0	0	0	0	1	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0028	1620	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979