JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ENTREP2_chr15_29115252_29575979	0/0	c0029	1620	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0030	1620	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0031	1620	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0032	1620	1	0	0	1	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0033	1620	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0034	1620	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0035	1620	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0036	1620	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0037	1620	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0038	1620	1	0	1	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0039	1620	1	0	1	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	c0040	1620	1	0	0	0	0	1	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP3_chr1_155242205_155260483	0/1	c0001	2007	332	86	59	129	18	39	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	c0002	2007	17	0	0	17	0	0	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	c0003	2007	16	0	0	15	0	1	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	c0004	2007	7	6	1	0	0	0	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	c0005	2007	4	0	0	4	0	0	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	c0006	2007	3	0	0	3	0	0	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	c0007	2007	3	0	0	3	0	0	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	c0008	2007	3	0	0	3	0	0	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	c0009	2007	2	2	0	0	0	0	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	c0010	2007	2	0	0	1	0	1	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	c0011	2007	1	1	0	0	0	0	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	c0012	2007	1	1	0	0	0	0	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	c0013	2007	1	0	0	1	0	0	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	c0014	2007	1	0	0	0	0	1	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	c0015	2007	1	0	0	1	0	0	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	c0016	2007	1	0	0	1	0	0	copy fasta	ENTREP3	chr1	155242205	155260483
ENY2_chr8_109329347_109350954	1/1	c0001	306	428	94	76	190	18	48	copy fasta	ENY2	chr8	109329347	109350954
EOGT_chr3_68970225_69018684	1/1	c0001	1584	164	37	29	68	8	20	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	c0002	1584	155	26	22	88	3	16	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	c0003	1584	72	7	8	49	3	5	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	c0004	1584	13	13	0	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	c0005	1584	7	0	7	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	c0006	1584	6	0	6	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	c0007	1584	5	4	1	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	c0008	1584	5	4	1	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	c0009	1584	5	0	0	5	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	c0010	1584	2	0	0	0	0	2	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	c0011	1584	2	0	0	0	0	2	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	c0012	1584	2	2	0	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	c0013	1584	1	0	0	1	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	c0014	1584	1	1	0	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	c0015	1584	1	0	0	0	0	1	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	c0016	1584	1	1	0	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	c0017	1584	1	1	0	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	c0018	1584	1	0	0	1	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOLA1_chrX_149536012_149553331	1/1	c0001	477	295	58	53	136	12	34	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	c0002	477	12	11	1	0	0	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	c0003	477	3	3	0	0	0	0	copy fasta	EOLA1	chrX	149536012	149553331