JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EOLA1_chrX_149536012_149553331	0/0	c0004	477	2	2	0	0	0	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	c0005	477	1	1	0	0	0	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	c0006	476	1	0	0	0	1	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	c0007	477	1	1	0	0	0	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA2_chrX_149927197_149943491	1/1	c0001	477	297	56	54	141	12	32	copy fasta	EOLA2	chrX	149927197	149943491
EOLA2_chrX_149927197_149943491	0/0	c0002	477	14	13	1	0	0	0	copy fasta	EOLA2	chrX	149927197	149943491
EOLA2_chrX_149927197_149943491	0/0	c0003	477	9	9	0	0	0	0	copy fasta	EOLA2	chrX	149927197	149943491
EOLA2_chrX_149927197_149943491	0/0	c0004	477	4	1	1	0	1	1	copy fasta	EOLA2	chrX	149927197	149943491
EOLA2_chrX_149927197_149943491	0/0	c0005	477	3	1	0	2	0	0	copy fasta	EOLA2	chrX	149927197	149943491
EOLA2_chrX_149927197_149943491	0/0	c0006	477	2	0	0	1	0	1	copy fasta	EOLA2	chrX	149927197	149943491
EOLA2_chrX_149927197_149943491	0/0	c0007	477	1	1	0	0	0	0	copy fasta	EOLA2	chrX	149927197	149943491
EOLA2_chrX_149927197_149943491	0/0	c0008	477	1	1	0	0	0	0	copy fasta	EOLA2	chrX	149927197	149943491
EOMES_chr3_27710953_27727323	0/0	c0001	2124	216	24	30	127	6	29	copy fasta	EOMES	chr3	27710953	27727323
EOMES_chr3_27710953_27727323	1/1	c0002	2118	154	47	38	48	8	11	copy fasta	EOMES	chr3	27710953	27727323
EOMES_chr3_27710953_27727323	0/0	c0003	2118	14	14	0	0	0	0	copy fasta	EOMES	chr3	27710953	27727323
EOMES_chr3_27710953_27727323	0/0	c0004	2121	7	7	0	0	0	0	copy fasta	EOMES	chr3	27710953	27727323
EOMES_chr3_27710953_27727323	0/0	c0005	2118	1	0	0	1	0	0	copy fasta	EOMES	chr3	27710953	27727323
EOMES_chr3_27710953_27727323	0/0	c0006	2118	1	0	0	1	0	0	copy fasta	EOMES	chr3	27710953	27727323
EOMES_chr3_27710953_27727323	0/0	c0007	2118	1	1	0	0	0	0	copy fasta	EOMES	chr3	27710953	27727323
EOMES_chr3_27710953_27727323	0/0	c0008	2124	1	0	0	0	0	1	copy fasta	EOMES	chr3	27710953	27727323
EOMES_chr3_27710953_27727323	0/0	c0009	2124	1	0	0	1	0	0	copy fasta	EOMES	chr3	27710953	27727323
EOMES_chr3_27710953_27727323	0/0	c0010	2124	1	0	1	0	0	0	copy fasta	EOMES	chr3	27710953	27727323
EOMES_chr3_27710953_27727323	0/0	c0011	2124	1	0	1	0	0	0	copy fasta	EOMES	chr3	27710953	27727323
EOMES_chr3_27710953_27727323	0/0	c0012	2118	1	1	0	0	0	0	copy fasta	EOMES	chr3	27710953	27727323
EOMES_chr3_27710953_27727323	0/0	c0013	2118	1	0	0	0	0	1	copy fasta	EOMES	chr3	27710953	27727323
EP300_chr22_41087592_41185077	1/0	c0001	7245	93	28	18	27	7	12	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	c0002	7245	78	13	8	45	3	9	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/1	c0003	7245	44	2	18	6	4	13	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	c0004	7245	36	14	2	20	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	c0005	7245	10	10	0	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	c0006	7245	7	7	0	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	c0007	7245	3	3	0	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	c0008	7245	3	0	0	3	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	c0009	7245	2	1	1	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	c0010	7245	2	2	0	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	c0011	7245	2	0	0	2	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	c0012	7245	1	0	1	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	c0013	7245	1	1	0	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	c0014	7245	1	1	0	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	c0015	7245	1	0	0	1	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	c0016	7245	1	0	0	0	0	1	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	c0017	7245	1	0	0	0	0	1	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	c0018	7245	1	0	0	1	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	c0019	7245	1	0	0	1	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	c0020	7245	1	1	0	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	c0021	7245	1	0	0	1	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	c0022	7245	1	1	0	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	c0023	7245	1	0	0	0	0	1	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	c0024	7245	1	0	1	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	c0025	7245	1	0	1	0	0	0	copy fasta	EP300	chr22	41087592	41185077