JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EP300_chr22_41087592_41185077	0/0	c0026	7245	1	0	0	1	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	c0027	7245	1	0	0	0	0	1	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	c0028	7245	1	1	0	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	c0029	7245	1	0	1	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	c0030	7245	1	1	0	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	c0031	7245	1	0	1	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP400_chr12_131944942_132085460	1/0	c0001	9372	38	5	8	20	1	3	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/1	c0002	9375	23	1	6	6	2	7	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0003	9375	22	1	0	20	1	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0004	9375	11	10	1	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0005	9378	8	0	5	1	0	2	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0006	9375	8	0	6	2	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0007	9372	6	6	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0008	9375	6	6	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0009	9378	4	4	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0010	9378	3	1	2	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0011	9375	3	0	3	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0012	9378	3	3	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0013	9375	3	3	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0014	9378	3	3	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0015	9372	2	1	1	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0016	9375	2	1	1	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0017	9375	2	2	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0018	9375	2	0	0	2	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0019	9372	2	0	0	1	0	1	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0020	9381	2	2	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0021	9375	2	1	1	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0022	9372	2	2	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0023	9378	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0024	9378	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0025	9375	1	0	0	1	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0026	9375	1	0	0	0	0	1	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0027	9375	1	0	0	0	0	1	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0028	9384	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0029	9372	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0030	9375	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0031	9375	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0032	9375	1	0	0	1	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0033	9375	1	0	0	1	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0034	9372	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0035	9369	1	0	0	1	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0036	9375	1	0	0	0	0	1	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0037	9381	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0038	9384	1	0	0	0	1	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0039	9375	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0040	9372	1	0	0	1	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0041	9372	1	0	0	1	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0042	9375	1	0	0	1	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0043	9375	1	0	0	1	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0044	9375	1	0	1	0	0	0	copy fasta	EP400	chr12	131944942	132085460