JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABCA13_chr7_48166458_48652497	0/0	c0102	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0103	15177	1	0	0	0	0	1	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0104	15177	1	0	1	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0105	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0106	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0107	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0108	15177	1	0	0	1	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0109	15177	1	0	1	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0110	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0111	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0112	15177	1	0	0	1	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0113	15177	1	0	0	1	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0114	15177	1	0	0	1	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA1_chr9_104776006_104933155	0/1	c0001	6786	42	2	16	10	5	8	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0002	6786	18	0	3	14	0	1	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0003	6786	17	0	2	12	0	3	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0004	6786	11	0	1	10	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0005	6786	11	0	2	9	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0006	6786	10	3	0	5	0	2	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0007	6786	9	0	8	1	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	1/0	c0008	6786	9	0	2	2	1	3	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0009	6786	8	0	1	5	1	1	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0010	6786	7	7	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0011	6786	7	1	0	6	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0012	6786	7	0	3	4	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0013	6786	6	0	0	6	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0014	6786	5	1	1	3	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0015	6786	5	5	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0016	6786	4	0	2	0	0	2	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0017	6786	4	4	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0018	6786	4	0	1	3	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0019	6786	4	0	0	4	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0020	6786	3	3	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0021	6786	3	2	0	0	0	1	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0022	6786	3	3	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0023	6786	3	0	0	1	2	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0024	6786	3	3	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0025	6786	3	2	1	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0026	6786	3	1	0	0	0	2	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0027	6786	3	0	0	1	1	1	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0028	6786	3	0	2	1	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0029	6786	3	3	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0030	6786	2	0	0	1	0	1	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0031	6786	2	2	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0032	6786	2	2	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0033	6786	2	2	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0034	6786	2	2	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0035	6786	2	0	1	0	0	1	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0036	6786	2	2	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0037	6786	2	1	0	1	0	0	copy fasta	ABCA1	chr9	104776006	104933155