Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADGRG4_chrX_136295963_136421890	0/0	c0044	9243	1	1	0	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG5_chr16_57537643_57582189	0/0	c0001	1587	154	26	25	74	5	24	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	1/1	c0002	1587	126	27	31	43	6	17	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	c0003	1587	78	3	4	67	1	3	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	c0004	1587	12	12	0	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	c0005	1587	11	11	0	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	c0006	1587	5	5	0	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	c0007	1587	3	3	0	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	c0008	1587	2	0	0	2	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	c0009	1587	2	0	0	2	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	c0010	1587	2	0	0	2	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	c0011	1587	2	2	0	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	c0012	1587	1	0	0	1	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	c0013	1587	1	0	1	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	c0014	1587	1	0	1	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	c0015	1587	1	1	0	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	c0016	1587	1	0	0	1	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	c0017	1587	1	1	0	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	c0018	1587	1	1	0	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	c0019	1587	1	1	0	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	c0020	1587	1	1	0	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG6_chr6_142297007_142451261	0/1	c0001	3753	125	40	24	46	6	8	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	c0002	3753	45	0	8	32	2	3	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	c0003	3753	43	15	6	12	4	6	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	c0004	3753	13	1	8	3	0	1	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	c0005	3753	12	11	1	0	0	0	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	c0006	3753	11	2	0	9	0	0	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	c0007	3753	2	2	0	0	0	0	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	c0008	3753	2	0	0	2	0	0	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	c0009	3753	2	2	0	0	0	0	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	c0010	3753	1	1	0	0	0	0	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	1/0	c0011	3753	1	0	0	0	0	0	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	c0012	3753	1	0	0	0	1	0	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	c0013	3753	1	0	1	0	0	0	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	c0014	3753	1	0	0	0	1	0	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG7_chr3_100604601_100700479	1/1	c0001	2394	204	51	34	91	11	15	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	c0002	2394	74	9	11	50	2	2	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	c0003	2394	35	8	14	4	2	7	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	c0004	2394	4	4	0	0	0	0	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	c0005	2394	4	3	0	0	1	0	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	c0006	2394	4	3	1	0	0	0	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	c0007	2394	3	3	0	0	0	0	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	c0008	2394	2	2	0	0	0	0	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	c0009	2394	2	1	1	0	0	0	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	c0010	2394	1	1	0	0	0	0	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	c0011	2394	1	1	0	0	0	0	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	c0012	2394	1	1	0	0	0	0	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	c0013	2394	1	0	0	1	0	0	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	c0014	2394	1	0	0	1	0	0	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	c0015	2394	1	1	0	0	0	0	copy fasta	ADGRG7	chr3	100604601	100700479