JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EP400_chr12_131944942_132085460	0/0	c0045	9372	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0046	9375	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0047	9375	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0048	9372	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0049	9375	1	0	0	0	0	1	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0050	9375	1	0	1	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0051	9378	1	0	1	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0052	9378	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0053	9378	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0054	9381	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0055	9378	1	0	0	0	1	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0056	9375	1	0	0	0	0	1	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0057	9375	1	0	1	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0058	9375	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0059	9375	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0060	9372	1	0	0	1	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0061	9372	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0062	9372	1	0	0	1	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0063	9372	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0064	9378	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0065	9372	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0066	9375	1	0	1	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0067	9369	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0068	9372	1	0	1	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0069	9375	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0070	9375	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0071	9375	1	0	1	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0072	9375	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	c0073	9372	1	0	1	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EPAS1_chr2_46292407_46391697	1/1	c0001	2613	245	44	52	99	15	33	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	c0002	2613	45	23	0	21	0	1	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	c0003	2613	12	10	2	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	c0004	2613	9	8	1	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	c0005	2613	2	0	1	0	1	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	c0006	2613	2	1	1	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	c0007	2613	2	2	0	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	c0008	2613	1	1	0	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	c0009	2613	1	0	0	0	0	1	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	c0010	2613	1	0	1	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	c0011	2613	1	0	0	1	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	c0012	2613	1	0	0	1	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	c0013	2613	1	0	0	0	0	1	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	c0014	2613	1	1	0	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	c0015	2613	1	1	0	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	c0016	2613	1	1	0	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPB41L1_chr20_36149740_36237799	1/1	c0001	2646	166	50	36	52	9	17	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	c0002	2646	39	15	6	18	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	c0003	2646	10	8	2	0	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	c0004	2646	4	3	1	0	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	c0005	2646	4	3	1	0	0	0	copy fasta	EPB41L1	chr20	36149740	36237799