JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EPB41L1_chr20_36149740_36237799	0/0	c0006	2646	3	3	0	0	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	c0007	2646	2	2	0	0	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	c0008	2646	1	1	0	0	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	c0009	2646	1	0	0	1	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	c0010	2646	1	0	0	0	1	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	c0011	2646	1	1	0	0	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	c0012	2646	1	1	0	0	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	c0013	2646	1	1	0	0	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	c0014	2646	1	0	0	0	0	1	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	c0015	2646	1	0	0	1	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L2_chr6_130834347_131068245	1/1	c0001	3018	267	52	43	127	9	34	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	c0002	3018	62	22	9	22	1	8	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	c0003	3018	4	4	0	0	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	c0004	3018	3	2	0	1	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	c0005	3018	3	3	0	0	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	c0006	3018	2	0	1	0	0	1	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	c0007	3018	2	0	0	2	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	c0008	3018	2	2	0	0	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	c0009	3018	1	0	0	0	0	1	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	c0010	3018	1	1	0	0	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	c0011	3018	1	0	0	1	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	c0012	3018	1	0	0	1	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	c0013	3018	1	1	0	0	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	c0014	3018	1	0	1	0	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	c0015	3018	1	0	0	1	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	c0016	3018	1	0	0	1	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	c0017	3018	1	0	0	1	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	c0018	3018	1	1	0	0	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	c0019	3018	1	0	0	1	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L3_chr18_5387386_5548997	0/1	c0001	3264	114	23	28	45	3	14	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	1/0	c0002	3264	51	37	6	5	0	2	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	c0003	3264	16	3	6	4	1	2	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	c0004	3264	7	5	1	0	0	1	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	c0005	3264	5	5	0	0	0	0	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	c0006	3264	4	3	1	0	0	0	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	c0007	3264	3	0	0	3	0	0	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	c0008	3264	3	1	0	0	2	0	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	c0009	3264	2	2	0	0	0	0	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	c0010	3264	2	2	0	0	0	0	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	c0011	3264	2	2	0	0	0	0	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	c0012	3264	2	2	0	0	0	0	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	c0013	3264	1	1	0	0	0	0	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	c0014	3264	1	0	0	0	0	1	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	c0015	3264	1	0	0	1	0	0	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	c0016	3264	1	0	1	0	0	0	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	c0017	3264	1	1	0	0	0	0	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	c0018	3264	1	0	0	0	0	1	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	c0019	3264	1	0	1	0	0	0	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	c0020	3264	1	0	0	1	0	0	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	c0021	3264	1	1	0	0	0	0	copy fasta	EPB41L3	chr18	5387386	5548997