JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EPB41L4B_chr9_109166974_109326059	0/0	c0019	2703	1	0	1	0	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	c0020	2703	1	1	0	0	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L5_chr2_120008077_120184119	1/0	c0001	2202	141	45	27	54	2	12	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/1	c0002	2202	131	30	28	58	2	12	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/0	c0003	2202	2	2	0	0	0	0	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/0	c0004	2202	1	0	0	1	0	0	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/0	c0005	2202	1	0	0	1	0	0	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/0	c0006	2202	1	0	1	0	0	0	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/0	c0007	2202	1	1	0	0	0	0	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41_chr1_28909569_29125041	1/1	c0001	2595	257	58	53	109	6	29	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	c0002	2595	28	18	6	0	2	2	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	c0003	2595	10	0	0	10	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	c0004	2595	4	3	1	0	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	c0005	2595	3	0	2	0	0	1	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	c0006	2595	1	1	0	0	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	c0007	2595	1	0	0	1	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	c0008	2595	1	0	0	1	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	c0009	2595	1	0	0	1	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	c0010	2595	1	0	1	0	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	c0011	2595	1	1	0	0	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	c0012	2595	1	1	0	0	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	c0013	2595	1	0	1	0	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	c0014	2595	1	0	0	0	0	1	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	c0015	2595	1	0	0	0	0	1	copy fasta	EPB41	chr1	28909569	29125041
EPB42_chr15_43192227_43226018	1/1	c0001	2076	259	58	40	129	4	26	copy fasta	EPB42	chr15	43192227	43226018
EPB42_chr15_43192227_43226018	0/0	c0002	2076	15	9	0	6	0	0	copy fasta	EPB42	chr15	43192227	43226018
EPB42_chr15_43192227_43226018	0/0	c0003	2076	4	4	0	0	0	0	copy fasta	EPB42	chr15	43192227	43226018
EPB42_chr15_43192227_43226018	0/0	c0004	2076	2	2	0	0	0	0	copy fasta	EPB42	chr15	43192227	43226018
EPB42_chr15_43192227_43226018	0/0	c0005	2076	2	0	2	0	0	0	copy fasta	EPB42	chr15	43192227	43226018
EPB42_chr15_43192227_43226018	0/0	c0006	2076	1	0	0	1	0	0	copy fasta	EPB42	chr15	43192227	43226018
EPB42_chr15_43192227_43226018	0/0	c0007	2076	1	0	0	0	0	1	copy fasta	EPB42	chr15	43192227	43226018
EPB42_chr15_43192227_43226018	0/0	c0008	2076	1	1	0	0	0	0	copy fasta	EPB42	chr15	43192227	43226018
EPB42_chr15_43192227_43226018	0/0	c0009	2076	1	1	0	0	0	0	copy fasta	EPB42	chr15	43192227	43226018
EPB42_chr15_43192227_43226018	0/0	c0010	2076	1	0	0	0	0	1	copy fasta	EPB42	chr15	43192227	43226018
EPB42_chr15_43192227_43226018	0/0	c0011	2076	1	1	0	0	0	0	copy fasta	EPB42	chr15	43192227	43226018
EPC1_chr10_32262751_32352158	1/1	c0001	2442	198	50	46	61	15	24	copy fasta	EPC1	chr10	32262751	32352158
EPC1_chr10_32262751_32352158	0/0	c0002	2442	64	5	11	34	3	11	copy fasta	EPC1	chr10	32262751	32352158
EPC1_chr10_32262751_32352158	0/0	c0003	2442	22	20	2	0	0	0	copy fasta	EPC1	chr10	32262751	32352158
EPC1_chr10_32262751_32352158	0/0	c0004	2442	10	9	1	0	0	0	copy fasta	EPC1	chr10	32262751	32352158
EPC1_chr10_32262751_32352158	0/0	c0005	2442	6	5	1	0	0	0	copy fasta	EPC1	chr10	32262751	32352158
EPC1_chr10_32262751_32352158	0/0	c0006	2442	6	0	6	0	0	0	copy fasta	EPC1	chr10	32262751	32352158
EPC1_chr10_32262751_32352158	0/0	c0007	2442	3	0	0	3	0	0	copy fasta	EPC1	chr10	32262751	32352158
EPC1_chr10_32262751_32352158	0/0	c0008	2442	2	2	0	0	0	0	copy fasta	EPC1	chr10	32262751	32352158
EPC1_chr10_32262751_32352158	0/0	c0009	2442	2	1	1	0	0	0	copy fasta	EPC1	chr10	32262751	32352158
EPC1_chr10_32262751_32352158	0/0	c0010	2442	2	2	0	0	0	0	copy fasta	EPC1	chr10	32262751	32352158
EPC1_chr10_32262751_32352158	0/0	c0011	2442	1	0	0	1	0	0	copy fasta	EPC1	chr10	32262751	32352158
EPC1_chr10_32262751_32352158	0/0	c0012	2442	1	0	0	0	0	1	copy fasta	EPC1	chr10	32262751	32352158
EPC1_chr10_32262751_32352158	0/0	c0013	2442	1	0	0	1	0	0	copy fasta	EPC1	chr10	32262751	32352158
EPC2_chr2_148639751_148792569	1/1	c0001	2424	296	73	40	145	6	30	copy fasta	EPC2	chr2	148639751	148792569
EPC2_chr2_148639751_148792569	0/0	c0002	2424	3	3	0	0	0	0	copy fasta	EPC2	chr2	148639751	148792569