JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EPC2_chr2_148639751_148792569	0/0	c0003	2424	3	3	0	0	0	0	copy fasta	EPC2	chr2	148639751	148792569
EPC2_chr2_148639751_148792569	0/0	c0004	2424	2	2	0	0	0	0	copy fasta	EPC2	chr2	148639751	148792569
EPC2_chr2_148639751_148792569	0/0	c0005	2424	2	2	0	0	0	0	copy fasta	EPC2	chr2	148639751	148792569
EPC2_chr2_148639751_148792569	0/0	c0006	2424	1	1	0	0	0	0	copy fasta	EPC2	chr2	148639751	148792569
EPC2_chr2_148639751_148792569	0/0	c0007	2424	1	0	0	1	0	0	copy fasta	EPC2	chr2	148639751	148792569
EPCAM_chr2_47364311_47392020	0/0	c0001	945	316	81	39	161	10	25	copy fasta	EPCAM	chr2	47364311	47392020
EPCAM_chr2_47364311_47392020	1/1	c0002	945	108	6	29	42	6	23	copy fasta	EPCAM	chr2	47364311	47392020
EPCAM_chr2_47364311_47392020	0/0	c0003	945	11	0	0	11	0	0	copy fasta	EPCAM	chr2	47364311	47392020
EPCAM_chr2_47364311_47392020	0/0	c0004	945	4	3	1	0	0	0	copy fasta	EPCAM	chr2	47364311	47392020
EPCAM_chr2_47364311_47392020	0/0	c0005	945	4	4	0	0	0	0	copy fasta	EPCAM	chr2	47364311	47392020
EPCAM_chr2_47364311_47392020	0/0	c0006	945	2	0	0	2	0	0	copy fasta	EPCAM	chr2	47364311	47392020
EPCAM_chr2_47364311_47392020	0/0	c0007	945	1	0	0	1	0	0	copy fasta	EPCAM	chr2	47364311	47392020
EPCAM_chr2_47364311_47392020	0/0	c0008	945	1	0	1	0	0	0	copy fasta	EPCAM	chr2	47364311	47392020
EPCAM_chr2_47364311_47392020	0/0	c0009	945	1	1	0	0	0	0	copy fasta	EPCAM	chr2	47364311	47392020
EPCAM_chr2_47364311_47392020	0/0	c0010	945	1	1	0	0	0	0	copy fasta	EPCAM	chr2	47364311	47392020
EPCAM_chr2_47364311_47392020	0/0	c0011	945	1	0	0	1	0	0	copy fasta	EPCAM	chr2	47364311	47392020
EPDR1_chr7_37915640_37956936	0/1	c0001	675	273	51	62	111	14	34	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	1/0	c0002	675	144	32	19	76	2	14	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	c0003	675	12	12	0	0	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	c0004	675	10	0	0	10	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	c0005	675	4	0	0	4	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	c0006	675	2	0	2	0	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	c0007	675	1	0	1	0	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	c0008	675	1	0	0	1	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	c0009	675	1	1	0	0	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPG5_chr18_45842609_45972329	0/1	c0001	7740	100	14	20	45	5	15	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0002	7740	68	13	14	30	2	9	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0003	7740	22	1	1	16	0	4	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0004	7740	14	10	1	1	1	1	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	1/0	c0005	7740	11	1	5	1	0	3	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0006	7740	7	1	1	1	1	3	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0007	7740	6	6	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0008	7740	6	0	2	3	0	1	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0009	7740	5	0	0	5	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0010	7740	4	0	0	4	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0011	7740	4	4	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0012	7740	4	4	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0013	7740	3	3	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0014	7740	3	1	1	0	0	1	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0015	7740	2	2	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0016	7740	2	2	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0017	7740	2	2	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0018	7740	2	2	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0019	7740	2	2	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0020	7740	2	0	0	2	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0021	7740	2	0	2	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0022	7740	2	1	1	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0023	7740	2	0	0	2	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0024	7740	2	0	0	2	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0025	7740	2	0	1	0	0	1	copy fasta	EPG5	chr18	45842609	45972329