JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EPG5_chr18_45842609_45972329	0/0	c0026	7740	2	0	0	0	2	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0027	7740	1	1	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0028	7740	1	1	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0029	7740	1	0	1	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0030	7740	1	0	0	1	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0031	7740	1	0	1	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0032	7740	1	0	0	1	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0033	7740	1	0	0	0	1	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0034	7740	1	0	0	1	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0035	7740	1	0	0	1	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0036	7740	1	1	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0037	7740	1	1	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0038	7740	1	1	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0039	7740	1	0	0	1	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0040	7740	1	0	1	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0041	7740	1	1	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0042	7740	1	1	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0043	7740	1	1	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0044	7740	1	0	0	0	0	1	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0045	7740	1	0	1	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0046	7740	1	0	0	0	0	1	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0047	7740	1	0	0	1	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0048	7740	1	1	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	c0049	7740	1	0	1	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPGN_chr4_74303470_74321789	1/1	c0001	465	364	91	68	157	12	34	copy fasta	EPGN	chr4	74303470	74321789
EPGN_chr4_74303470_74321789	0/0	c0002	465	1	0	0	1	0	0	copy fasta	EPGN	chr4	74303470	74321789
EPGN_chr4_74303470_74321789	0/0	c0003	465	1	1	0	0	0	0	copy fasta	EPGN	chr4	74303470	74321789
EPHA10_chr1_37710976_37770120	1/0	c0001	3027	135	15	33	57	6	23	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	c0002	3027	64	7	19	30	3	5	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/1	c0003	3027	27	11	6	0	6	3	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	c0004	3027	24	10	0	12	0	2	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	c0005	3027	17	5	3	9	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	c0006	3027	11	9	2	0	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	c0007	3027	10	2	0	8	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	c0008	3027	9	3	2	4	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	c0009	3027	8	1	4	0	0	3	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	c0010	3027	8	0	0	8	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	c0011	3027	6	6	0	0	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	c0012	3027	6	0	0	6	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	c0013	3027	6	0	0	6	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	c0014	3027	5	5	0	0	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	c0015	3027	4	2	2	0	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	c0016	3027	3	0	0	3	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	c0017	3027	3	0	2	0	1	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	c0018	3027	2	2	0	0	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	c0019	3027	2	0	0	2	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	c0020	3027	2	0	0	0	0	2	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	c0021	3027	2	0	0	2	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	c0022	3027	1	0	0	1	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	c0023	3027	1	0	0	1	0	0	copy fasta	EPHA10	chr1	37710976	37770120