JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EPHA1_chr7_143386129_143413856	0/0	c0025	2931	1	0	0	0	0	1	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	c0026	2931	1	1	0	0	0	0	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	c0027	2931	1	0	0	1	0	0	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	c0028	2931	1	0	0	1	0	0	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	c0029	2931	1	0	0	1	0	0	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	c0030	2931	1	0	0	1	0	0	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	c0031	2931	1	0	0	1	0	0	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	c0032	2931	1	0	1	0	0	0	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	c0033	2931	1	0	0	0	0	1	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	c0034	2931	1	0	0	0	0	1	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	c0035	2931	1	1	0	0	0	0	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	c0036	2931	1	1	0	0	0	0	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	c0037	2931	1	1	0	0	0	0	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	c0038	2931	1	1	0	0	0	0	copy fasta	EPHA1	chr7	143386129	143413856
EPHA2_chr1_16119337_16161069	1/0	c0001	2931	116	7	28	58	4	18	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0002	2931	33	12	8	11	1	1	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/1	c0003	2931	30	6	4	11	2	6	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0004	2931	29	26	1	0	0	2	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0005	2931	24	13	4	0	3	4	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0006	2931	20	0	5	5	3	7	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0007	2931	7	0	7	0	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0008	2931	7	7	0	0	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0009	2931	6	2	4	0	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0010	2931	4	1	1	1	0	1	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0011	2931	3	3	0	0	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0012	2931	3	2	1	0	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0013	2931	2	2	0	0	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0014	2931	2	0	1	1	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0015	2931	2	1	1	0	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0016	2931	2	0	0	0	2	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0017	2931	2	0	1	1	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0018	2931	2	2	0	0	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0019	2931	1	1	0	0	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0020	2931	1	0	1	0	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0021	2931	1	0	0	1	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0022	2931	1	0	1	0	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0023	2931	1	0	0	1	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0024	2931	1	1	0	0	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0025	2931	1	0	0	0	0	1	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0026	2931	1	1	0	0	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0027	2931	1	1	0	0	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0028	2931	1	0	0	0	0	1	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0029	2931	1	1	0	0	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0030	2931	1	0	1	0	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0031	2931	1	0	0	0	1	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0032	2931	1	1	0	0	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0033	2931	1	0	0	0	0	1	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0034	2931	1	0	1	0	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0035	2931	1	1	0	0	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	c0036	2931	1	1	0	0	0	0	copy fasta	EPHA2	chr1	16119337	16161069