JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EPHA3_chr3_89102621_89487134	1/1	c0001	2952	90	19	20	35	3	11	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	c0002	2952	33	14	11	5	1	2	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	c0003	2952	28	3	12	9	2	2	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	c0004	2952	14	0	0	10	2	2	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	c0005	2952	12	10	2	0	0	0	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	c0006	2952	11	8	2	1	0	0	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	c0007	2952	4	3	1	0	0	0	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	c0008	2952	2	0	0	2	0	0	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	c0009	2952	2	2	0	0	0	0	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	c0010	2952	1	1	0	0	0	0	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	c0011	2952	1	0	0	0	0	1	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	c0012	2952	1	1	0	0	0	0	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	c0013	2952	1	1	0	0	0	0	copy fasta	EPHA3	chr3	89102621	89487134
EPHA4_chr2_221413027_221577304	1/1	c0001	2961	231	56	40	105	2	26	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	c0002	2961	28	7	7	11	0	3	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	c0003	2961	22	8	6	0	4	4	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	c0004	2961	3	2	1	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	c0005	2961	3	0	0	0	0	3	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	c0006	2961	1	1	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	c0007	2961	1	0	0	1	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	c0008	2961	1	1	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	c0009	2961	1	1	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	c0010	2961	1	0	0	1	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	c0011	2961	1	1	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	c0012	2961	1	1	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA5_chr4_65314567_65675489	1/1	c0001	3051	141	58	23	43	6	9	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	c0002	3051	51	5	10	26	2	8	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	c0003	3051	13	6	4	0	1	2	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	c0004	3051	8	1	2	1	2	2	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	c0005	3051	4	1	1	0	0	2	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	c0006	3051	3	3	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	c0007	3051	2	0	0	0	0	2	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	c0008	3051	2	0	0	0	1	1	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	c0009	3051	2	1	1	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	c0010	3051	1	0	0	1	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	c0011	3051	1	1	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	c0012	3051	1	1	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	c0013	3051	1	0	0	1	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	c0014	3051	1	0	1	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	c0015	3051	1	1	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	c0016	3051	1	1	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	c0017	3051	1	1	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA6_chr3_96809594_97766532	0/0	c0001	3393	35	21	11	3	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	c0002	3393	21	18	3	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	c0003	3393	11	8	2	1	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	c0004	3393	7	2	3	2	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	c0005	3393	2	1	1	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	c0006	3393	2	2	0	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	c0007	3393	1	0	1	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	c0008	3393	1	0	1	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532