JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EPHA6_chr3_96809594_97766532	0/0	c0009	3393	1	1	0	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	c0010	3393	1	1	0	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA7_chr6_93235020_93424559	0/1	c0001	2997	119	32	21	46	4	15	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	c0002	2997	49	33	9	0	2	5	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	c0003	2997	45	4	11	19	4	7	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	c0004	2997	25	0	8	14	1	2	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	c0005	2997	14	0	3	9	1	1	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	1/0	c0006	2997	6	0	2	1	1	1	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	c0007	2997	5	5	0	0	0	0	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	c0008	2997	4	4	0	0	0	0	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	c0009	2997	4	1	2	0	1	0	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	c0010	2997	4	0	2	2	0	0	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	c0011	2997	1	1	0	0	0	0	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	c0012	2997	1	1	0	0	0	0	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	c0013	2997	1	1	0	0	0	0	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	c0014	2997	1	0	0	1	0	0	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	c0015	2997	1	0	0	0	0	1	copy fasta	EPHA7	chr6	93235020	93424559
EPHA8_chr1_22558489_22608595	1/0	c0001	3018	150	34	29	66	7	13	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0002	3018	58	21	19	7	1	10	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0003	3018	26	0	9	12	1	4	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/1	c0004	3018	15	11	0	3	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0005	3018	12	0	1	8	0	3	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0006	3018	8	0	3	0	3	2	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0007	3019	6	0	2	4	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0008	3018	5	0	1	0	1	3	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0009	3018	5	2	3	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0010	3018	4	0	1	3	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0011	3018	3	3	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0012	3018	3	3	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0013	3018	3	0	0	3	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0014	3018	3	2	1	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0015	3018	2	0	1	0	0	1	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0016	3018	2	0	0	0	0	2	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0017	3018	2	0	0	2	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0018	3018	2	2	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0019	3018	2	2	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0020	3018	2	2	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0021	3018	2	0	2	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0022	3018	2	2	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0023	3018	1	1	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0024	2998	1	1	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0025	3018	1	1	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0026	3018	1	0	0	1	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0027	3018	1	1	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0028	3018	1	1	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0029	3018	1	0	0	0	1	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0030	3018	1	1	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0031	3018	1	0	1	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0032	3018	1	0	1	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0033	3018	1	0	1	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595