Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADGRG7_chr3_100604601_100700479	0/0	c0016	2394	1	0	1	0	0	0	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	c0017	2394	1	0	0	1	0	0	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRL1_chr19_14142743_14211169	1/1	c0001	4410	120	35	24	32	5	22	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	c0002	4410	42	7	21	8	2	4	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	c0003	4410	11	10	1	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	c0004	4410	7	7	0	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	c0005	4410	6	0	5	1	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	c0006	4410	5	4	1	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	c0007	4410	3	0	0	3	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	c0008	4410	3	0	0	3	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	c0009	4410	2	0	1	1	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	c0010	4410	2	2	0	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	c0011	4410	2	2	0	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	c0012	4410	1	1	0	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	c0013	4379	1	0	0	1	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	c0014	4410	1	1	0	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	c0015	4410	1	1	0	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	c0016	4410	1	1	0	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	c0017	4410	1	0	0	1	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	c0018	4410	1	0	0	1	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	c0019	4410	1	0	1	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	c0020	4410	1	0	0	1	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	c0021	4410	1	0	1	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	c0022	4410	1	1	0	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	c0023	4410	1	0	0	1	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	c0024	4410	1	1	0	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	c0025	4410	1	0	1	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	c0026	4410	1	0	0	1	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	c0027	4410	1	0	0	0	1	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	c0028	4410	1	1	0	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	c0029	4410	1	0	0	1	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	c0030	4410	1	0	0	1	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL2_chr1_81795934_81998932	0/1	c0001	4410	257	69	56	88	11	32	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	c0002	4410	9	0	8	0	1	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	c0003	4410	8	7	1	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	c0004	4410	4	4	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	1/0	c0005	4410	3	1	1	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	c0006	4410	3	0	0	3	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	c0007	4410	3	0	1	0	0	2	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	c0008	4410	2	0	0	2	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	c0009	4410	2	0	2	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	c0010	4410	2	2	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	c0011	4410	2	0	2	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	c0012	4410	2	0	1	0	0	1	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	c0013	4410	1	0	1	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	c0014	4410	1	0	0	1	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	c0015	4410	1	0	1	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	c0016	4410	1	0	0	0	0	1	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	c0017	4410	1	0	1	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	c0018	4410	1	1	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932