JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EPHA8_chr1_22558489_22608595	0/0	c0034	3018	1	1	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0035	3018	1	0	1	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0036	3018	1	0	0	0	0	1	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0037	3018	1	0	1	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0038	3018	1	1	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0039	3018	1	0	0	1	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0040	3018	1	0	0	0	0	1	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0041	3007	1	0	0	1	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0042	3019	1	0	0	1	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0043	3018	1	1	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0044	3018	1	1	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0045	3018	1	1	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0046	3018	1	0	1	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	c0047	3018	1	1	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHB1_chr3_134790260_135265467	0/0	c0001	2955	32	20	6	1	1	4	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	1/1	c0002	2955	31	14	5	2	1	7	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	c0003	2955	27	12	9	0	0	6	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	c0004	2955	24	11	4	3	2	4	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	c0005	2955	4	2	2	0	0	0	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	c0006	2955	4	2	2	0	0	0	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	c0007	2955	3	2	1	0	0	0	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	c0008	2955	1	0	1	0	0	0	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	c0009	2955	1	0	0	0	0	1	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	c0010	2955	1	1	0	0	0	0	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	c0011	2955	1	1	0	0	0	0	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	c0012	2955	1	1	0	0	0	0	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	c0013	2955	1	1	0	0	0	0	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	c0014	2955	1	0	0	0	0	1	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	c0015	2955	1	1	0	0	0	0	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	c0016	2955	1	0	0	0	0	1	copy fasta	EPHB1	chr3	134790260	135265467
EPHB2_chr1_22705839_22926500	0/1	c0001	2961	168	53	42	40	7	25	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	c0002	2961	61	19	9	30	2	1	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	c0003	2961	2	2	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	c0004	2961	2	2	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	1/0	c0005	2961	2	0	0	0	1	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	c0006	2961	2	2	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	c0007	2961	1	1	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	c0008	2961	1	1	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	c0009	2961	1	1	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	c0010	2961	1	0	0	1	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	c0011	2961	1	1	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	c0012	2961	1	0	0	1	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	c0013	2961	1	1	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	c0014	2961	1	1	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	c0015	2961	1	1	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	c0016	2961	1	1	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	c0017	2961	1	0	1	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB3_chr3_184556785_184587408	1/0	c0001	2997	132	28	24	54	6	19	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	c0002	2997	66	13	7	39	4	3	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	c0003	2997	60	14	8	28	2	8	copy fasta	EPHB3	chr3	184556785	184587408