JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EPHB3_chr3_184556785_184587408	0/0	c0004	2997	21	15	2	2	1	1	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	c0005	2997	13	5	6	0	0	2	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	c0006	2997	10	0	2	8	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	c0007	2997	7	7	0	0	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	c0008	2997	7	4	2	1	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	c0009	2997	7	0	7	0	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	c0010	2997	6	5	1	0	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	c0011	2997	4	0	0	4	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	c0012	2997	3	2	0	0	0	1	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/1	c0013	2997	2	0	1	0	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	c0014	2997	2	0	1	0	0	1	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	c0015	2997	2	0	1	1	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	c0016	2997	2	0	1	0	0	1	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	c0017	2997	1	0	0	1	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	c0018	2997	1	0	0	1	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	c0019	2997	1	1	0	0	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	c0020	2997	1	0	0	1	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	c0021	2997	1	1	0	0	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	c0022	2997	1	0	0	0	0	1	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	c0023	2997	1	0	0	0	1	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	c0024	2997	1	0	0	1	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	c0025	2997	1	0	1	0	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	c0026	2997	1	1	0	0	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	c0027	2997	1	0	1	0	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	c0028	2997	1	0	0	1	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	c0029	2997	1	0	0	0	0	1	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	c0030	2997	1	0	1	0	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB4_chr7_100797565_100832523	0/1	c0001	2964	140	12	31	67	5	24	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	c0002	2964	97	9	17	56	7	8	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	1/0	c0003	2964	45	25	5	7	0	7	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	c0004	2964	19	5	4	3	0	7	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	c0005	2964	11	11	0	0	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	c0006	2964	6	6	0	0	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	c0007	2964	5	5	0	0	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	c0008	2964	4	4	0	0	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	c0009	2964	4	4	0	0	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	c0010	2964	4	0	0	4	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	c0011	2964	4	0	0	4	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	c0012	2964	4	0	0	4	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	c0013	2964	3	3	0	0	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	c0014	2964	3	0	0	3	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	c0015	2964	2	2	0	0	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	c0016	2964	2	0	0	2	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	c0017	2964	1	1	0	0	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	c0018	2964	1	1	0	0	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	c0019	2964	1	1	0	0	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	c0020	2964	1	0	1	0	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	c0021	2964	1	0	0	1	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	c0022	2964	1	1	0	0	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	c0023	2964	1	0	1	0	0	0	copy fasta	EPHB4	chr7	100797565	100832523