JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EPHB4_chr7_100797565_100832523	0/0	c0024	2964	1	0	0	1	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	c0025	2964	1	0	1	0	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	c0026	2964	1	0	0	1	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	c0027	2964	1	0	0	1	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB6_chr7_142850076_142876093	0/1	c0001	3066	189	29	45	69	12	33	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	c0002	3072	40	26	7	6	1	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	c0003	3069	17	16	1	0	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	c0004	3066	16	0	7	9	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	c0005	3069	11	10	1	0	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	c0006	3069	10	4	2	2	0	2	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	c0007	3066	3	0	2	0	0	1	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	c0008	3066	3	3	0	0	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	c0009	3066	3	0	3	0	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	c0010	3066	2	2	0	0	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	c0011	3066	2	0	0	2	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	c0012	3066	2	0	0	2	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	c0013	3066	1	0	1	0	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	c0014	3072	1	0	0	0	0	1	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	c0015	3072	1	1	0	0	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	c0016	3084	1	1	0	0	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	c0017	3069	1	0	0	1	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	c0018	3066	1	1	0	0	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	c0019	3066	1	0	0	1	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	c0020	3066	1	1	0	0	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	c0021	3066	1	0	0	1	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	c0022	3066	1	0	0	1	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	c0023	3066	1	0	0	0	1	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	c0024	3066	1	0	0	0	0	1	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	c0025	3066	1	0	1	0	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHX1_chr1_225805124_225850563	1/1	c0001	1368	104	29	31	25	5	12	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0002	1368	86	5	13	52	4	12	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0003	1368	38	5	8	20	1	4	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0004	1368	25	0	5	17	0	3	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0005	1368	23	14	7	0	2	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0006	1368	19	1	0	18	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0007	1368	16	5	2	7	0	2	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0008	1368	10	0	0	6	0	4	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0009	1368	8	0	0	8	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0010	1368	7	0	1	5	0	1	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0011	1368	6	3	0	3	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0012	1368	6	6	0	0	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0013	1368	5	3	2	0	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0014	1368	5	3	1	0	0	1	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0015	1368	5	4	1	0	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0016	1368	5	5	0	0	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0017	1368	4	4	0	0	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0018	1368	4	0	0	4	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0019	1368	3	0	0	2	0	1	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0020	1368	2	0	0	2	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0021	1368	2	0	0	2	0	0	copy fasta	EPHX1	chr1	225805124	225850563