JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EPHX1_chr1_225805124_225850563	0/0	c0022	1368	2	0	0	0	2	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0023	1368	2	2	0	0	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0024	1368	2	0	0	2	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0025	1368	2	0	0	0	0	2	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0026	1368	2	0	0	2	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0027	1368	2	2	0	0	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0028	1368	2	0	0	2	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0029	1368	2	0	0	1	0	1	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0030	1368	1	0	0	1	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0031	1368	1	0	0	1	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0032	1368	1	0	0	1	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0033	1368	1	0	1	0	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0034	1368	1	1	0	0	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0035	1368	1	0	0	1	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0036	1368	1	0	0	1	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0037	1368	1	0	0	1	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0038	1368	1	1	0	0	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0039	1368	1	0	1	0	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0040	1368	1	0	0	1	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0041	1368	1	0	1	0	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0042	1368	1	0	0	0	0	1	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0043	1368	1	0	0	0	0	1	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0044	1368	1	0	1	0	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0045	1368	1	0	1	0	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0046	1368	1	1	0	0	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0047	1368	1	0	0	1	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0048	1368	1	0	0	0	0	1	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0049	1368	1	1	0	0	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0050	1368	1	0	0	1	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0051	1368	1	1	0	0	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	c0052	1368	1	0	0	1	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX2_chr8_27486143_27550564	1/1	c0001	1668	137	14	32	66	4	19	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0002	1668	59	8	2	40	2	7	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0003	1668	49	5	4	33	1	6	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0004	1668	21	21	0	0	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0005	1668	16	10	0	6	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0006	1668	13	5	4	0	0	4	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0007	1668	12	11	1	0	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0008	1668	9	0	1	8	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0009	1668	7	0	0	7	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0010	1668	7	5	2	0	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0011	1668	4	0	0	2	2	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0012	1671	3	0	2	1	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0013	1668	3	0	0	3	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0014	1668	3	2	1	0	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0015	1668	3	3	0	0	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0016	1668	3	0	3	0	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0017	1668	2	0	0	2	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0018	1671	2	0	2	0	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0019	1668	2	2	0	0	0	0	copy fasta	EPHX2	chr8	27486143	27550564