JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EPM2A_chr6_145620305_145740520	0/0	c0012	996	1	0	0	0	0	1	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/0	c0013	996	1	0	0	1	0	0	copy fasta	EPM2A	chr6	145620305	145740520
EPN2_chr17_19232366_19341715	0/1	c0001	1926	247	82	41	88	8	27	copy fasta	EPN2	chr17	19232366	19341715
EPN2_chr17_19232366_19341715	1/0	c0002	1926	31	1	5	16	0	8	copy fasta	EPN2	chr17	19232366	19341715
EPN2_chr17_19232366_19341715	0/0	c0003	1926	1	0	1	0	0	0	copy fasta	EPN2	chr17	19232366	19341715
EPN2_chr17_19232366_19341715	0/0	c0004	1926	1	1	0	0	0	0	copy fasta	EPN2	chr17	19232366	19341715
EPN2_chr17_19232366_19341715	0/0	c0005	1926	1	0	1	0	0	0	copy fasta	EPN2	chr17	19232366	19341715
EPN2_chr17_19232366_19341715	0/0	c0006	1926	1	0	0	0	0	1	copy fasta	EPN2	chr17	19232366	19341715
EPN3_chr17_50527735_50548750	1/1	c0001	1899	193	33	35	86	7	30	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	c0002	1899	95	48	19	16	7	5	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	c0003	1899	19	3	7	7	1	1	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	c0004	1899	14	0	3	5	2	4	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	c0005	1899	5	0	3	0	0	2	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	c0006	1899	3	3	0	0	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	c0007	1899	3	3	0	0	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	c0008	1899	2	2	0	0	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	c0009	1899	2	0	1	0	0	1	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	c0010	1899	2	2	0	0	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	c0011	1899	1	1	0	0	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	c0012	1899	1	0	0	0	0	1	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	c0013	1917	1	1	0	0	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	c0014	1899	1	0	0	0	0	1	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	c0015	1899	1	0	0	1	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	c0016	1899	1	0	1	0	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	c0017	1899	1	1	0	0	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	c0018	1899	1	0	0	0	0	1	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	c0019	1899	1	0	0	1	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	c0020	1899	1	0	0	0	1	0	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	c0021	1899	1	0	1	0	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	c0022	1917	1	1	0	0	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPOP_chr17_38666703_38679957	0/1	c0001	1140	174	18	46	84	3	22	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	c0002	1140	80	27	11	36	0	6	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	c0003	1140	65	49	4	10	1	1	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	c0004	1140	22	2	1	12	2	5	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	c0005	1140	2	0	2	0	0	0	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	c0006	1140	1	0	0	1	0	0	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	c0007	1140	1	0	0	1	0	0	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	c0008	1140	1	0	0	0	0	1	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	c0009	1140	1	0	1	0	0	0	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	c0010	1140	1	0	0	1	0	0	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	c0011	1140	1	0	0	1	0	0	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	c0012	1140	1	0	0	0	0	1	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	c0013	1140	1	0	1	0	0	0	copy fasta	EPOP	chr17	38666703	38679957
EPOR_chr19_11372207_11389314	1/1	c0001	1527	372	73	70	168	16	43	copy fasta	EPOR	chr19	11372207	11389314
EPOR_chr19_11372207_11389314	0/0	c0002	1527	21	19	2	0	0	0	copy fasta	EPOR	chr19	11372207	11389314
EPOR_chr19_11372207_11389314	0/0	c0003	1527	2	2	0	0	0	0	copy fasta	EPOR	chr19	11372207	11389314
EPOR_chr19_11372207_11389314	0/0	c0004	1527	2	0	2	0	0	0	copy fasta	EPOR	chr19	11372207	11389314
EPOR_chr19_11372207_11389314	0/0	c0005	1527	2	0	0	0	0	2	copy fasta	EPOR	chr19	11372207	11389314
EPOR_chr19_11372207_11389314	0/0	c0006	1527	1	0	1	0	0	0	copy fasta	EPOR	chr19	11372207	11389314
EPOR_chr19_11372207_11389314	0/0	c0007	1527	1	1	0	0	0	0	copy fasta	EPOR	chr19	11372207	11389314