JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EPOR_chr19_11372207_11389314	0/0	c0008	1527	1	0	1	0	0	0	copy fasta	EPOR	chr19	11372207	11389314
EPOR_chr19_11372207_11389314	0/0	c0009	1527	1	0	0	0	0	1	copy fasta	EPOR	chr19	11372207	11389314
EPOR_chr19_11372207_11389314	0/0	c0010	1527	1	1	0	0	0	0	copy fasta	EPOR	chr19	11372207	11389314
EPO_chr7_100715468_100728700	1/1	c0001	582	373	87	59	161	18	46	copy fasta	EPO	chr7	100715468	100728700
EPO_chr7_100715468_100728700	0/0	c0002	582	3	0	3	0	0	0	copy fasta	EPO	chr7	100715468	100728700
EPO_chr7_100715468_100728700	0/0	c0003	582	1	1	0	0	0	0	copy fasta	EPO	chr7	100715468	100728700
EPO_chr7_100715468_100728700	0/0	c0004	582	1	1	0	0	0	0	copy fasta	EPO	chr7	100715468	100728700
EPO_chr7_100715468_100728700	0/0	c0005	582	1	0	0	1	0	0	copy fasta	EPO	chr7	100715468	100728700
EPO_chr7_100715468_100728700	0/0	c0006	582	1	1	0	0	0	0	copy fasta	EPO	chr7	100715468	100728700
EPPIN_chr20_45535626_45552401	1/1	c0001	402	386	80	70	176	14	44	copy fasta	EPPIN	chr20	45535626	45552401
EPPIN_chr20_45535626_45552401	0/0	c0002	402	45	15	11	19	0	0	copy fasta	EPPIN	chr20	45535626	45552401
EPPIN_chr20_45535626_45552401	0/0	c0003	402	5	0	0	5	0	0	copy fasta	EPPIN	chr20	45535626	45552401
EPPIN_chr20_45535626_45552401	0/0	c0004	402	2	1	1	0	0	0	copy fasta	EPPIN	chr20	45535626	45552401
EPPK1_chr8_143852324_143883467	0/0	c0001	15261	17	0	3	14	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0002	15261	5	2	0	3	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0003	12066	4	0	2	2	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0004	13659	4	1	3	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0005	15261	4	0	0	4	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0006	15279	3	0	0	3	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0007	16830	3	3	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0008	18447	3	0	3	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0009	15261	3	0	3	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0010	15261	3	0	0	3	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0011	13659	3	0	0	3	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0012	15255	3	0	0	3	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0013	13674	3	0	0	3	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0014	13650	3	0	0	3	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0015	13644	2	2	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0016	15261	2	0	0	2	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0017	15279	2	0	2	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0018	15273	2	0	0	0	0	2	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0019	15279	2	0	0	0	0	2	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0020	13674	2	0	2	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0021	15279	2	0	2	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0022	15276	2	0	0	2	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0023	12075	2	0	0	0	0	2	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0024	15279	2	0	0	0	1	1	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0025	12075	2	0	0	2	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0026	12075	2	0	0	0	0	2	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0027	13674	2	0	2	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0028	15279	2	0	0	0	0	2	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0029	16854	2	2	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0030	18447	2	0	2	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0031	18447	2	0	0	0	2	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0032	13650	2	0	0	2	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0033	15261	2	2	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0034	15255	2	0	0	2	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0035	15261	2	0	0	0	2	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0036	15261	2	0	0	2	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0037	15261	2	0	0	2	0	0	copy fasta	EPPK1	chr8	143852324	143883467