JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EPPK1_chr8_143852324_143883467	0/0	c0138	15261	1	0	0	0	1	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0139	15261	1	0	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0140	15282	1	0	0	0	0	1	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0141	15279	1	0	0	0	0	1	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0142	15279	1	0	0	0	0	1	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0143	15270	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0144	15279	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0145	24804	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0146	15222	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0147	12063	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0148	13665	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0149	13665	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0150	13659	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0151	24804	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0152	18447	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0153	15252	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0154	18447	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0155	18447	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0156	21618	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0157	21618	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0158	18447	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0159	40410	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0160	21681	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0161	32782	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0162	24817	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0163	21669	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0164	21675	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0165	21669	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0166	21669	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0167	18423	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0168	13659	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0169	15261	1	0	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0170	16854	1	0	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0171	23259	1	0	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0172	21618	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0173	26406	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0174	15279	1	0	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0175	15261	1	0	0	0	0	1	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0176	12076	1	0	0	0	0	1	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0177	13650	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0178	15279	1	0	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0179	13659	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0180	15279	1	0	0	0	0	1	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0181	13677	1	0	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0182	15252	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0183	13677	1	0	0	0	0	1	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0184	15279	1	0	0	0	0	1	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0185	15279	1	0	0	0	0	1	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0186	15279	1	0	0	0	0	1	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0187	15279	1	0	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467