Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADGRL2_chr1_81795934_81998932	0/0	c0019	4410	1	0	0	0	0	1	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	c0020	4410	1	0	1	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	c0021	4410	1	0	0	0	0	1	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL3_chr4_61195326_62083335	0/1	c0001	4632	20	13	3	0	0	3	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	c0002	4632	9	8	1	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	c0003	4632	7	6	1	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	c0004	4632	4	3	0	0	0	1	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	c0005	4632	3	2	0	0	0	1	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	c0006	4632	2	2	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	c0007	4632	2	1	1	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	c0008	4632	2	2	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	c0009	4632	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	c0010	4632	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	c0011	4632	1	0	1	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	c0012	4632	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	1/0	c0013	4632	1	0	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	c0014	4632	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	c0015	4632	1	0	1	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	c0016	4632	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	c0017	4632	1	0	0	0	0	1	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL4_chr1_78884764_79011730	0/1	c0001	2073	229	41	43	112	8	24	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	c0002	2073	86	18	14	40	5	9	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	1/0	c0003	2073	42	14	12	13	0	2	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	c0004	2073	7	6	1	0	0	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	c0005	2073	7	7	0	0	0	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	c0006	2073	5	0	0	5	0	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	c0007	2073	2	0	0	0	0	2	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	c0008	2073	2	2	0	0	0	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	c0009	2073	2	2	0	0	0	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	c0010	2073	2	0	1	0	1	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	c0011	2073	1	1	0	0	0	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	c0012	2073	1	0	0	0	0	1	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	c0013	2073	1	0	0	1	0	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	c0014	2073	1	0	0	1	0	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	c0015	2073	1	1	0	0	0	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	c0016	2073	1	0	1	0	0	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRV1_chr5_90553797_91169437	0/0	c0001	18921	16	0	5	9	0	2	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0002	18921	11	2	3	4	0	2	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/1	c0003	18921	7	3	2	0	1	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0004	18921	5	0	0	5	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0005	18921	5	0	1	3	0	1	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0006	18921	5	0	0	5	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0007	18921	4	0	0	4	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0008	18921	3	1	1	1	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0009	18921	2	2	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0010	18921	2	2	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0011	18921	2	2	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0012	18921	2	1	1	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0013	18921	2	2	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0014	18921	2	0	0	0	0	2	copy fasta	ADGRV1	chr5	90553797	91169437