JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
EPPK1_chr8_143852324_143883467	0/0	c0288	15279	1	0	0	1	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0289	18480	1	0	0	1	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0290	18489	1	0	0	1	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0291	15285	1	0	0	1	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0292	18489	1	0	0	1	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0293	10464	1	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0294	15261	1	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0295	15261	1	0	0	1	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0296	15261	1	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0297	13659	1	0	0	1	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0298	15261	1	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0299	15261	1	0	0	0	1	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0300	15261	1	0	0	0	1	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0301	28008	1	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0302	15261	1	0	0	1	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0303	13668	1	0	0	1	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0304	13644	1	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0305	15267	1	0	0	0	1	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0306	15261	1	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0307	15261	1	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0308	15261	1	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0309	13668	1	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0310	18456	1	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0311	15252	1	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0312	15261	1	0	0	1	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0313	15273	1	0	0	1	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0314	18465	1	0	0	1	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0315	18408	1	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0316	15225	1	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0317	13632	1	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0318	15261	1	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0319	15261	1	0	0	1	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0320	15261	1	0	0	1	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0321	15261	1	0	0	1	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0322	15261	1	0	0	1	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0323	15261	1	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0324	15255	1	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0325	10461	1	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0326	15233	1	0	0	1	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0327	27990	1	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0328	15252	1	0	0	1	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0329	15261	1	0	0	1	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0330	20025	1	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0331	23202	1	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0332	15225	1	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0333	34380	1	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0334	18456	1	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0335	13665	1	0	0	1	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0336	13644	1	0	0	1	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0337	15279	1	0	0	0	1	copy fasta	EPPK1	chr8	143852324	143883467