JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EPPK1_chr8_143852324_143883467	0/0	c0338	15279	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0339	21681	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0340	18408	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0341	12063	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0342	15252	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0343	15255	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0344	15261	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0345	12075	1	0	0	0	0	1	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0346	15261	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	c0347	12057	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPRS1_chr1_219963600_220051505	0/1	c0001	4539	166	37	30	74	3	21	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	c0002	4539	87	6	16	53	5	7	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	1/0	c0003	4539	29	1	5	12	4	6	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	c0004	4539	17	16	1	0	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	c0005	4539	11	3	0	7	0	1	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	c0006	4539	10	10	0	0	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	c0007	4539	9	3	3	1	0	2	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	c0008	4539	4	4	0	0	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	c0009	4539	3	3	0	0	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	c0010	4539	3	0	3	0	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	c0011	4539	2	2	0	0	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	c0012	4539	2	2	0	0	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	c0013	4539	1	0	0	1	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	c0014	4539	1	1	0	0	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	c0015	4539	1	0	0	1	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	c0016	4539	1	1	0	0	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	c0017	4539	1	1	0	0	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	c0018	4539	1	0	0	1	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	c0019	4539	1	0	0	1	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	c0020	4539	1	1	0	0	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	c0021	4539	1	1	0	0	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	c0022	4539	1	0	1	0	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	c0023	4539	1	0	0	1	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	c0024	4539	1	0	1	0	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	c0025	4539	1	0	0	0	0	1	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	c0026	4539	1	0	0	0	0	1	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	c0027	4539	1	0	0	0	0	1	copy fasta	EPRS1	chr1	219963600	220051505
EPS15L1_chr19_16350247_16476970	1/1	c0001	2733	263	79	50	94	8	30	copy fasta	EPS15L1	chr19	16350247	16476970
EPS15L1_chr19_16350247_16476970	0/0	c0002	2733	3	0	3	0	0	0	copy fasta	EPS15L1	chr19	16350247	16476970
EPS15L1_chr19_16350247_16476970	0/0	c0003	2733	3	0	0	3	0	0	copy fasta	EPS15L1	chr19	16350247	16476970
EPS15L1_chr19_16350247_16476970	0/0	c0004	2733	2	2	0	0	0	0	copy fasta	EPS15L1	chr19	16350247	16476970
EPS15L1_chr19_16350247_16476970	0/0	c0005	2733	1	1	0	0	0	0	copy fasta	EPS15L1	chr19	16350247	16476970
EPS15L1_chr19_16350247_16476970	0/0	c0006	2733	1	0	0	1	0	0	copy fasta	EPS15L1	chr19	16350247	16476970
EPS15L1_chr19_16350247_16476970	0/0	c0007	2733	1	0	0	1	0	0	copy fasta	EPS15L1	chr19	16350247	16476970
EPS15L1_chr19_16350247_16476970	0/0	c0008	2733	1	0	0	1	0	0	copy fasta	EPS15L1	chr19	16350247	16476970
EPS15L1_chr19_16350247_16476970	0/0	c0009	2733	1	0	1	0	0	0	copy fasta	EPS15L1	chr19	16350247	16476970
EPS15_chr1_51349263_51524266	0/1	c0001	2691	53	35	9	0	6	2	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	c0002	2691	49	20	7	10	1	11	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	1/0	c0003	2691	24	5	12	0	1	5	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	c0004	2691	13	7	2	0	0	4	copy fasta	EPS15	chr1	51349263	51524266