JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EPS15_chr1_51349263_51524266	0/0	c0005	2691	2	0	1	0	1	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	c0006	2691	2	1	0	0	1	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	c0007	2691	1	1	0	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	c0008	2691	1	1	0	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	c0009	2691	1	1	0	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	c0010	2691	1	0	1	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	c0011	2691	1	1	0	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	c0012	2691	1	1	0	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	c0013	2691	1	1	0	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	c0014	2691	1	1	0	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	c0015	2691	1	1	0	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS8L1_chr19_55070869_55092923	1/1	c0001	2172	186	53	43	67	4	17	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L1_chr19_55070869_55092923	0/0	c0002	2172	91	16	12	41	1	21	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L1_chr19_55070869_55092923	0/0	c0003	2172	30	1	11	14	2	2	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L1_chr19_55070869_55092923	0/0	c0004	2172	13	8	3	2	0	0	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L1_chr19_55070869_55092923	0/0	c0005	2172	4	4	0	0	0	0	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L1_chr19_55070869_55092923	0/0	c0006	2172	2	2	0	0	0	0	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L1_chr19_55070869_55092923	0/0	c0007	2172	2	2	0	0	0	0	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L1_chr19_55070869_55092923	0/0	c0008	2172	2	2	0	0	0	0	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L1_chr19_55070869_55092923	0/0	c0009	2172	1	1	0	0	0	0	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L1_chr19_55070869_55092923	0/0	c0010	2172	1	1	0	0	0	0	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L1_chr19_55070869_55092923	0/0	c0011	2172	1	1	0	0	0	0	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L1_chr19_55070869_55092923	0/0	c0012	2172	1	0	1	0	0	0	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L1_chr19_55070869_55092923	0/0	c0013	2172	1	1	0	0	0	0	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L1_chr19_55070869_55092923	0/0	c0014	2172	1	0	0	1	0	0	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L1_chr19_55070869_55092923	0/0	c0015	2172	1	1	0	0	0	0	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L1_chr19_55070869_55092923	0/0	c0016	2172	1	0	0	1	0	0	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L1_chr19_55070869_55092923	0/0	c0017	2172	1	1	0	0	0	0	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L1_chr19_55070869_55092923	0/0	c0018	2172	1	0	0	0	1	0	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L2_chr11_701231_732727	1/0	c0001	2148	156	18	19	87	6	25	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/1	c0002	2148	86	18	30	25	7	5	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	c0003	2148	84	28	11	29	1	15	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	c0004	2148	27	9	5	9	1	3	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	c0005	2148	18	0	4	12	0	2	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	c0006	2148	13	10	2	1	0	0	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	c0007	2148	4	2	2	0	0	0	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	c0008	2148	4	4	0	0	0	0	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	c0009	2148	3	3	0	0	0	0	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	c0010	2148	3	3	0	0	0	0	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	c0011	2148	2	0	0	0	2	0	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	c0012	2148	1	0	0	0	1	0	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	c0013	2148	1	0	0	1	0	0	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	c0014	2148	1	0	1	0	0	0	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	c0015	2140	1	1	0	0	0	0	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	c0016	2148	1	0	1	0	0	0	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	c0017	2148	1	0	1	0	0	0	copy fasta	EPS8L2	chr11	701231	732727
EPS8L3_chr1_109745080_109768923	0/1	c0001	1782	196	11	24	129	10	21	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	1/0	c0002	1782	66	7	21	22	4	11	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	c0003	1782	33	17	8	7	1	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	c0004	1782	32	27	2	0	0	3	copy fasta	EPS8L3	chr1	109745080	109768923